Factsheet for Bra004456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80105	Canola	nucleus	88.77	99.08
AT2G47460.1	Thale cress	nucleus	56.71	55.8
Bra000453.1-P	Field mustard	nucleus	36.16	35.11
Bra037419.1-P	Field mustard	nucleus	31.78	33.82
TraesCS1D01G021700.1	Wheat	nucleus	29.04	33.76
Os01t0305900-01	Rice	nucleus	28.49	32.81
Bra036145.1-P	Field mustard	nucleus	30.96	32.56
GSMUA_AchrUn_...	Banana	nucleus	28.22	32.19
Bra000680.1-P	Field mustard	nucleus	19.73	32.14
HORVU4Hr1G054420.3	Barley	nucleus	29.86	32.06
GSMUA_Achr8P10470_001	Banana	nucleus	32.33	31.81
TraesCS4B01G186000.1	Wheat	nucleus	29.86	31.5
TraesCS4A01G118400.1	Wheat	nucleus	29.86	31.5
Zm00001d028842_P001	Maize	nucleus	28.77	31.34
TraesCS4D01G187100.1	Wheat	nucleus	29.59	31.21
TraesCS1B01G023400.1	Wheat	nucleus	27.4	31.15
Zm00001d047671_P001	Maize	nucleus	29.32	31.1
TraesCS1B01G005200.1	Wheat	nucleus	27.95	30.72
TraesCS1B01G049700.1	Wheat	nucleus	26.58	30.22
OQU86782	Sorghum	nucleus	29.86	30.19
TraesCS1B01G023500.1	Wheat	nucleus	26.3	29.91
Zm00001d040621_P002	Maize	nucleus	28.77	29.66
EER92385	Sorghum	nucleus	27.95	28.65
TraesCS1A01G021500.1	Wheat	nucleus	26.3	28.49
KRH11988	Soybean	nucleus	25.75	28.48
KRH37017	Soybean	nucleus	26.03	28.44
Bra017685.1-P	Field mustard	nucleus	21.1	28.41
TraesCS1D01G020900.1	Wheat	nucleus	26.3	28.32
Bra023486.1-P	Field mustard	nucleus	14.52	28.19
Bra008740.1-P	Field mustard	nucleus	15.07	27.92
KRH50769	Soybean	nucleus	25.75	27.89
Bra022602.1-P	Field mustard	nucleus	15.07	27.78
Bra039395.1-P	Field mustard	nucleus	18.9	27.49
GSMUA_Achr5P21250_001	Banana	nucleus	24.11	27.41
KRH02323	Soybean	nucleus	26.03	27.14
Bra011576.1-P	Field mustard	nucleus	21.1	26.83
Bra024526.1-P	Field mustard	nucleus	19.18	26.02
Bra027423.1-P	Field mustard	nucleus	18.08	25.88
Bra029113.1-P	Field mustard	nucleus	13.97	25.63
Bra012337.1-P	Field mustard	nucleus	19.18	25.36
VIT_05s0077g01360.t01	Wine grape	nucleus	26.58	25.33
Bra010736.1-P	Field mustard	nucleus	18.9	24.38
Bra013055.1-P	Field mustard	nucleus	19.18	24.31
Bra035532.1-P	Field mustard	nucleus	17.26	24.23
Bra033572.1-P	Field mustard	nucleus	19.18	23.81
Bra025311.1-P	Field mustard	nucleus	12.05	19.56
Bra039065.1-P	Field mustard	nucleus	10.41	19.1
Bra025589.1-P	Field mustard	nucleus	13.15	18.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra004456	EnsemblPlants:Bra004456.1	EnsemblPlants:Bra004456.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009416	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733
GO:GO:0009813	GO:GO:0009987	GO:GO:0010224	GO:GO:0045893	GO:GO:0051555	GO:GO:1900386
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CJS2	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF203	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00025480B6
SEG:seg	:	:	:	:	:

Description

AT2G47460 (E=5e-051) MYB12, ATMYB12, PFG1 | MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor

Coordinates

chrA05:-:222923..225991

Molecular Weight (calculated)

40448.8 Da

IEP (calculated)

4.599

GRAVY (calculated)

-0.679

Length

365 amino acids

Sequence
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSSYIQ SNGEGSWRSL PQNAVSQSQR GNITPEEEEL VVKMHSTLGN RWSLIASHLP GRTDNEIKNY WNSHLSRKLH
101: YIRKSHDVPA VIMNAPPTSQ RLPEKRRLGR TSRSAMKPKT HKPKTRKTKK TSASPELDSN VVVNAVVGEE ALMIELSGAE ADLGPRDDYY YGACHEVGDC
201: CNTNNNNNNL MSININGDSG VLSFDEHDII DLLLDESDPG NVFTSSVGDG ELSPLGDSTI ARGSSETSNL GNLECLQPCR SVESFLNYEH QVNDALTDEF
301: IDWDCVWQEG NKSNKLCDEK EASDPVVSWL LNGDDEATIG QSNCEKFGEP LDHDEENALV AWLLS

Best Arabidopsis Sequence Match ( AT2G47460.1 )
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S

Arabidopsis Description

MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.