Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G005200.1 | Wheat | nucleus | 78.34 | 74.1 |
| KRG94424 | Soybean | nucleus | 19.43 | 66.3 |
| TraesCS4D01G187100.1 | Wheat | nucleus | 72.29 | 65.61 |
| TraesCS1D01G020900.1 | Wheat | nucleus | 66.24 | 61.36 |
| Zm00001d028842_P001 | Maize | nucleus | 52.87 | 49.55 |
| Zm00001d047671_P001 | Maize | nucleus | 52.23 | 47.67 |
| EER92385 | Sorghum | nucleus | 52.87 | 46.63 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 28.03 | 37.61 |
| TraesCS4D01G319800.1 | Wheat | nucleus | 26.75 | 37.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.9 | 37.19 |
| KRH31822 | Soybean | nucleus | 40.13 | 36.84 |
| TraesCS4D01G224500.1 | Wheat | nucleus | 27.07 | 36.8 |
| AT3G62610.1 | Thale cress | nucleus | 39.49 | 36.15 |
| VIT_07s0005g01210.t01 | Wine grape | nucleus | 42.04 | 35.97 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 28.03 | 35.63 |
| PGSC0003DMT400011167 | Potato | nucleus | 30.25 | 35.19 |
| GSMUA_Achr8P10470_001 | Banana | nucleus | 41.08 | 34.77 |
| Solyc06g009710.2.1 | Tomato | nucleus | 32.8 | 34.68 |
| KRH69237 | Soybean | nucleus | 40.76 | 34.5 |
| TraesCS7D01G166500.1 | Wheat | nucleus | 27.39 | 34.13 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 29.3 | 33.95 |
| TraesCS5D01G335700.1 | Wheat | nucleus | 28.66 | 33.83 |
| TraesCS4D01G319700.1 | Wheat | nucleus | 26.11 | 33.74 |
| PGSC0003DMT400018841 | Potato | nucleus | 32.48 | 33.66 |
| KRG96503 | Soybean | nucleus | 37.9 | 33.62 |
| Solyc12g049350.1.1 | Tomato | nucleus | 30.89 | 33.11 |
| GSMUA_Achr5P21250_001 | Banana | nucleus | 33.76 | 33.02 |
| KRH68241 | Soybean | nucleus | 37.58 | 32.87 |
| TraesCS3D01G468400.1 | Wheat | nucleus | 27.71 | 32.83 |
| AT2G47460.1 | Thale cress | nucleus | 38.53 | 32.61 |
| Bra036145.1-P | Field mustard | nucleus | 35.99 | 32.56 |
| Bra000453.1-P | Field mustard | nucleus | 38.85 | 32.45 |
| Bra037419.1-P | Field mustard | nucleus | 35.35 | 32.36 |
| KRH37017 | Soybean | nucleus | 34.08 | 32.04 |
| Solyc01g079620.2.1 | Tomato | nucleus | 34.39 | 31.95 |
| AT5G49330.1 | Thale cress | nucleus | 34.71 | 31.87 |
| KRH11988 | Soybean | nucleus | 33.44 | 31.82 |
| KRH50769 | Soybean | nucleus | 33.44 | 31.16 |
| PGSC0003DMT400023322 | Potato | nucleus | 35.67 | 30.85 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 28.34 | 30.8 |
| VIT_05s0077g01360.t01 | Wine grape | nucleus | 36.31 | 29.77 |
| KRH02323 | Soybean | nucleus | 33.12 | 29.71 |
| TraesCS3D01G257800.1 | Wheat | nucleus | 25.48 | 29.52 |
| Bra004456.1-P | Field mustard | nucleus | 33.76 | 29.04 |
| TraesCS5D01G128200.2 | Wheat | nucleus | 27.07 | 27.78 |
| CDY27486 | Canola | plastid | 9.87 | 13.14 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G021700.1 | EnsemblPlantsGene:TraesCS1D01G021700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb-rel_proteinP_C | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF595 | PFAM:PF00249 | PFAM:PF06640 | PFscan:PS51294 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | TIGR:cd00167 | MapMan:15.5.2.1 | : | : |
Description
No Description!
Coordinates
chr1D:+:9283505..9288824
Molecular Weight (calculated)
34793.8 Da
IEP (calculated)
6.790
GRAVY (calculated)
-0.706
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKV GLKRGRWTAK EDDTLAKYIA RHGEGSWRSL PQNAGLLRCG KSCRLRWVNY LRDGVRRGNF SNEEDDLIVK LHATLGNRWS LIASHLPGRT
101: DNEIKNYWNA HLSRRSHSFR HTHTAGKETT ITIDINKISA TSKRRGGRAP RSSMKKQPVP EPTKSTESSS PVPAISSSTS SLPQGYSDKN QPINSIPNDM
201: PCSDHVDLNG GVLKPNYAKD SMNQIGILEE ESEIEGLLSS MDDMPASGLN GLQHGGHLPL VEDLLDMDWE GFATHLWDQP AQSDQLQPAE PQATMGSVSD
301: ELESFVHWLL SDTC
101: DNEIKNYWNA HLSRRSHSFR HTHTAGKETT ITIDINKISA TSKRRGGRAP RSSMKKQPVP EPTKSTESSS PVPAISSSTS SLPQGYSDKN QPINSIPNDM
201: PCSDHVDLNG GVLKPNYAKD SMNQIGILEE ESEIEGLLSS MDDMPASGLN GLQHGGHLPL VEDLLDMDWE GFATHLWDQP AQSDQLQPAE PQATMGSVSD
301: ELESFVHWLL SDTC
001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S
Arabidopsis Description
MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.