Factsheet for TraesCS4D01G319700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G319800.1	Wheat	nucleus	81.07	87.95
TraesCS5A01G495500.1	Wheat	nucleus	85.19	85.54
TraesCS4B01G323300.1	Wheat	nucleus	86.01	85.31
HORVU4Hr1G082610.1	Barley	nucleus	83.95	77.86
TraesCS7D01G166500.1	Wheat	nucleus	72.84	70.24
TraesCS4D01G224500.1	Wheat	nucleus	65.43	68.83
Zm00001d044975_P001	Maize	nucleus	63.37	56.62
Zm00001d037118_P001	Maize	nucleus	62.96	56.04
GSMUA_Achr9P27380_001	Banana	nucleus	46.91	43.85
GSMUA_Achr6P04400_001	Banana	nucleus	48.97	43.27
VIT_11s0016g01310.t01	Wine grape	nucleus	39.09	43.18
TraesCS3D01G468400.1	Wheat	nucleus	41.98	38.49
VIT_11s0016g01320.t01	Wine grape	nucleus	41.56	35.56
KRH02634	Soybean	nucleus	44.86	35.5
TraesCS7D01G272400.1	Wheat	nucleus	34.16	35.47
KRH19274	Soybean	nucleus	44.03	35.2
KRH06177	Soybean	nucleus	40.74	34.74
TraesCS1D01G268900.1	Wheat	nucleus	34.98	34.41
CDX84119	Canola	nucleus	36.63	34.1
Bra035532.1-P	Field mustard	nucleus	35.8	33.46
CDY49363	Canola	nucleus	35.8	33.33
KRH47594	Soybean	nucleus	37.45	33.21
TraesCS5D01G335700.1	Wheat	nucleus	34.98	31.95
TraesCS3D01G257800.1	Wheat	nucleus	34.98	31.37
TraesCS3D01G377300.1	Wheat	nucleus	33.74	30.26
AT5G35550.2	Thale cress	nucleus	31.69	29.5
Solyc12g049300.1.1	Tomato	nucleus	41.56	28.69
TraesCS4D01G092900.1	Wheat	nucleus	32.92	27.68
TraesCS5D01G128200.2	Wheat	nucleus	34.57	27.45
TraesCS1D01G021700.1	Wheat	nucleus	33.74	26.11
TraesCS4D01G187100.1	Wheat	nucleus	35.8	25.14
TraesCS1D01G020900.1	Wheat	nucleus	32.92	23.6
PGSC0003DMT400030322	Potato	nucleus	2.88	4.27

Protein Annotations

EnsemblPlants:TraesCS4D01G319700.1	EnsemblPlantsGene:TraesCS4D01G319700	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF459	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:483369177..483370023

Molecular Weight (calculated)

25854.4 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.446

Length

243 amino acids

Sequence
(BLAST)

001: MGRRACSANE GVKRGAWTSK EDDTLASYVK AHGEGRWKEV PLKAGLQRCG KSCRLRWLNY LRPSIKRGNI SDDEEELIIR LHRLLGNRWS LIAGRLPGRT
101: DNEIKNYWNS TLGRKVLPAR LDTTRMVASP GASAGSCSST GAATSALSSN CGAGTSAKAA APPLSIAVWA PKPVRCTGGL FFGRDAPPPP VTETRAVGGD
201: GDECSGSSLG ASSGGGDWMD DVRALSSFLE SDEDWVNSLQ MAD

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.