Factsheet for TraesCS3D01G468400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G100500.1	Barley	nucleus	84.91	88.24
TraesCS3B01G515900.1	Wheat	nucleus	55.85	72.55
EER92144	Sorghum	nucleus	55.47	50.0
VIT_11s0016g01310.t01	Wine grape	nucleus	41.13	49.55
TraesCS4D01G319800.1	Wheat	nucleus	39.62	46.88
GSMUA_Achr10P...	Banana	nucleus	48.3	46.04
TraesCS7D01G166500.1	Wheat	nucleus	41.89	44.05
TraesCS4D01G319700.1	Wheat	nucleus	38.49	41.98
VIT_11s0016g01320.t01	Wine grape	nucleus	43.77	40.85
TraesCS4D01G224500.1	Wheat	nucleus	35.09	40.26
KRH02634	Soybean	nucleus	45.66	39.41
KRH06177	Soybean	nucleus	41.89	38.95
KRH47594	Soybean	nucleus	40.0	38.69
KRH19274	Soybean	nucleus	44.15	38.49
TraesCS7D01G272400.1	Wheat	nucleus	33.21	37.61
Bra035532.1-P	Field mustard	nucleus	36.6	37.31
CDY49363	Canola	nucleus	36.6	37.16
CDX84119	Canola	nucleus	36.6	37.16
TraesCS1D01G268900.1	Wheat	nucleus	33.96	36.44
TraesCS5D01G335700.1	Wheat	nucleus	33.96	33.83
TraesCS3D01G377300.1	Wheat	nucleus	33.96	33.21
TraesCS3D01G257800.1	Wheat	nucleus	33.21	32.47
Solyc12g049300.1.1	Tomato	nucleus	42.64	32.1
AT5G35550.2	Thale cress	nucleus	30.94	31.42
TraesCS4D01G092900.1	Wheat	nucleus	33.96	31.14
TraesCS5D01G128200.2	Wheat	nucleus	33.21	28.76
TraesCS1D01G021700.1	Wheat	nucleus	32.83	27.71
TraesCS1D01G020900.1	Wheat	nucleus	33.96	26.55
TraesCS4D01G187100.1	Wheat	nucleus	33.58	25.72
PGSC0003DMT400030322	Potato	nucleus	3.02	4.88

Protein Annotations

EnsemblPlants:TraesCS3D01G468400.1	EnsemblPlantsGene:TraesCS3D01G468400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF459	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:570801243..570803210

Molecular Weight (calculated)

28052.1 Da

IEP (calculated)

5.598

GRAVY (calculated)

-0.439

Length

265 amino acids

Sequence
(BLAST)

001: MGRKPCCAKE GLNRGAWTAM EDEILVSYIN DHGEGKWGSL PKRAGLNRCG KSCRLRWLNY LRPGIKRGNI SDDEEELIVR LHGLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT TLSKRNQQSH GAGCSNHPQA KPLPPAPQAG GEAQALPEGT SSSPIRTKAL RCTTTVLAAA EGFHEQGRAA PEHVAAEDQL GDCLSIGSID
201: LDLEGIELGF MMSPWSGGAD GVGDQHFGAP GAEADGLEEL LGLGVAGGGG DGHGGLGDLE LAWLC

Best Arabidopsis Sequence Match ( AT5G35550.1 )
(BLAST)

001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC

Arabidopsis Description

TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.