Factsheet for VIT_11s0016g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01310.t01	Wine grape	nucleus	46.48	60.0
TraesCS3B01G515900.1	Wheat	nucleus	36.27	50.49
VIT_17s0000g02650.t01	Wine grape	nucleus	29.23	50.3
VIT_04s0008g01800.t01	Wine grape	nucleus	42.25	45.28
VIT_04s0008g01870.t01	Wine grape	nucleus	30.99	44.67
TraesCS3D01G468400.1	Wheat	nucleus	40.85	43.77
TraesCS4D01G319800.1	Wheat	nucleus	34.51	43.75
HORVU3Hr1G100500.1	Barley	nucleus	38.73	43.14
VIT_13s0084g00530.t01	Wine grape	nucleus	39.44	42.59
GSMUA_Achr9P16040_001	Banana	nucleus	38.38	42.41
VIT_09s0002g01380.t01	Wine grape	nucleus	29.93	41.87
TraesCS7B01G070400.1	Wheat	nucleus	37.32	41.73
GSMUA_Achr8P22690_001	Banana	nucleus	42.61	41.72
TraesCS7D01G166500.1	Wheat	nucleus	36.97	41.67
TraesCS4D01G319700.1	Wheat	nucleus	35.56	41.56
GSMUA_Achr3P07940_001	Banana	nucleus	41.2	41.49
VIT_04s0008g01840.t01	Wine grape	nucleus	32.75	41.15
VIT_11s0016g01300.t01	Wine grape	nucleus	43.31	40.86
TraesCS5A01G495500.1	Wheat	nucleus	34.51	40.5
VIT_04s0008g01820.t01	Wine grape	nucleus	41.9	40.07
TraesCS4B01G323300.1	Wheat	nucleus	34.51	40.0
CDX84119	Canola	nucleus	36.62	39.85
Bra035532.1-P	Field mustard	nucleus	35.92	39.23
Zm00001d037118_P001	Maize	nucleus	37.68	39.19
HORVU7Hr1G034630.1	Barley	nucleus	36.97	39.18
VIT_04s0008g01810.t01	Wine grape	nucleus	38.03	39.13
CDY49363	Canola	nucleus	35.92	39.08
VIT_01s0011g04760.t01	Wine grape	nucleus	30.63	38.67
TraesCS4D01G224500.1	Wheat	nucleus	31.34	38.53
Zm00001d044975_P001	Maize	nucleus	36.62	38.24
TraesCS7A01G165700.1	Wheat	nucleus	35.21	38.17
HORVU4Hr1G082610.1	Barley	nucleus	34.86	37.79
VIT_18s0117g00200.t01	Wine grape	nucleus	30.99	37.77
VIT_11s0016g05660.t01	Wine grape	nucleus	29.58	37.67
VIT_14s0006g01620.t01	Wine grape	nucleus	29.58	36.84
HORVU4Hr1G063760.1	Barley	nucleus	29.93	36.8
EER92144	Sorghum	nucleus	37.68	36.39
VIT_11s0016g05690.t01	Wine grape	nucleus	28.52	36.32
VIT_17s0000g02660.t01	Wine grape	nucleus	29.23	36.24
VIT_09s0002g01400.t01	Wine grape	nucleus	43.66	36.15
VIT_17s0000g08480.t01	Wine grape	nucleus	27.11	35.65
VIT_14s0066g01220.t01	Wine grape	nucleus	26.76	35.02
VIT_04s0023g03710.t01	Wine grape	nucleus	29.58	34.71
VIT_03s0038g02310.t01	Wine grape	nucleus	30.63	34.66
VIT_15s0046g00170.t01	Wine grape	nucleus	34.51	34.27
VIT_04s0008g01830.t01	Wine grape	nucleus	33.45	33.69
AT5G35550.2	Thale cress	nucleus	30.63	33.33
VIT_18s0117g00210.t01	Wine grape	nucleus	30.28	33.33
VIT_09s0002g01410.t01	Wine grape	nucleus	33.8	32.43
VIT_01s0127g00730.t01	Wine grape	nucleus	24.3	31.36
VIT_07s0130g00040.t01	Wine grape	nucleus	29.93	29.31
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	30.99	28.21
VIT_08s0007g07230.t01	Wine grape	nucleus	30.99	27.5
VIT_07s0005g01210.t01	Wine grape	nucleus	30.63	23.71
VIT_05s0077g01360.t01	Wine grape	nucleus	31.69	23.5

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100264512	wikigene:100264512	MapMan:15.5.2.1	ProteinID:ACK56131	ProteinID:ACK56131.1
EMBL:AM478442	ProteinID:CAN75189	ProteinID:CAN75189.1	ProteinID:CCB51411	ProteinID:CCB51411.1	EMBL:EU919682
UniProt:F6HGP6	EMBL:FN595756	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100264512	wikigene:LOC100264512	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF508	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001984304	ArrayExpress:VIT_11s0016g01320
EnsemblPlantsGene:VIT_11s0016g01320	EnsemblPlants:VIT_11s0016g01320.t01	unigene:Vvi.20476	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:1065427..1067043

Molecular Weight (calculated)

31777.3 Da

IEP (calculated)

5.520

GRAVY (calculated)

-0.727

Length

284 amino acids

Sequence
(BLAST)

001: MGRRPCCAKE GLNRGSWSAW EDKILCNYVE VHGEGKWRDL PQRAGLKRCG KSCRLRWLNY LRPDIKRGNI SSEEEELIIR LHKLLGNRWS LIAGRLPGRT
101: DNEIKNYWNT NLSKRLQASK GQNSPNKKVE NPKNQTSGTG KSSAEPHTVI RTRAVRCSKV IIPRVQADFD ENPSPKMAVP TSEPSSSALE QGETANFFMG
201: FDIGDLLTSD ALNSFLDQDE EMGENNSNGV SDLFPPCSDF LAPEIENQEG VSGLLQPSEA LELKTLASFL NSEDEWITEN NQVP

Best Arabidopsis Sequence Match ( AT5G35550.1 )
(BLAST)

001: MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG
101: RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF
201: PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE DWLRDFTC

Arabidopsis Description

TT2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT5G35550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.