Factsheet for VIT_04s0008g01870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g01380.t01	Wine grape	nucleus	68.53	66.5
VIT_17s0000g02650.t01	Wine grape	nucleus	37.06	44.24
VIT_11s0016g01310.t01	Wine grape	nucleus	43.15	38.64
VIT_04s0008g01840.t01	Wine grape	nucleus	43.15	37.61
GSMUA_Achr11P...	Banana	nucleus	43.15	36.17
VIT_01s0011g04760.t01	Wine grape	nucleus	38.58	33.78
VIT_11s0016g05660.t01	Wine grape	nucleus	38.07	33.63
GSMUA_Achr4P21700_001	Banana	nucleus	39.59	33.62
VIT_04s0008g01820.t01	Wine grape	nucleus	50.25	33.33
VIT_17s0000g08480.t01	Wine grape	nucleus	36.55	33.33
VIT_04s0023g03710.t01	Wine grape	nucleus	40.61	33.06
VIT_14s0006g01620.t01	Wine grape	nucleus	38.07	32.89
VIT_04s0008g01800.t01	Wine grape	nucleus	44.16	32.83
VIT_17s0000g02660.t01	Wine grape	nucleus	37.56	32.31
VIT_14s0066g01220.t01	Wine grape	nucleus	35.53	32.26
GSMUA_Achr2P17960_001	Banana	nucleus	42.13	32.17
GSMUA_Achr8P14540_001	Banana	nucleus	42.13	31.92
VIT_04s0008g01810.t01	Wine grape	nucleus	44.67	31.88
VIT_11s0016g05690.t01	Wine grape	nucleus	36.04	31.84
VIT_01s0127g00730.t01	Wine grape	nucleus	35.53	31.82
VIT_11s0016g01300.t01	Wine grape	nucleus	48.22	31.56
VIT_11s0016g01320.t01	Wine grape	nucleus	44.67	30.99
VIT_18s0117g00200.t01	Wine grape	nucleus	36.55	30.9
VIT_13s0084g00530.t01	Wine grape	nucleus	41.12	30.8
VIT_03s0038g02310.t01	Wine grape	nucleus	39.09	30.68
VIT_15s0046g00170.t01	Wine grape	nucleus	43.15	29.72
VIT_04s0008g01830.t01	Wine grape	nucleus	40.61	28.37
VIT_09s0002g01400.t01	Wine grape	nucleus	48.73	27.99
VIT_18s0117g00210.t01	Wine grape	nucleus	36.55	27.91
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	41.62	26.28
VIT_09s0002g01410.t01	Wine grape	nucleus	39.09	26.01
VIT_08s0007g07230.t01	Wine grape	nucleus	42.13	25.94
VIT_07s0130g00040.t01	Wine grape	nucleus	36.04	24.48
VIT_07s0005g01210.t01	Wine grape	nucleus	39.59	21.25
VIT_05s0077g01360.t01	Wine grape	nucleus	40.1	20.63

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250947	wikigene:100250947	MapMan:15.5.2.1	EMBL:AM447374	ProteinID:CAN65256
ProteinID:CAN65256.1	ProteinID:CBI20720	ProteinID:CBI20720.3	UniProt:D7STX1	EMBL:FN595231	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100250947	wikigene:LOC100250947	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF558	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015C8E5D	ArrayExpress:VIT_04s0008g01870	EnsemblPlantsGene:VIT_04s0008g01870	EnsemblPlants:VIT_04s0008g01870.t01	RefSeq:XP_002279941
RefSeq:XP_002279941.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:1483002..1484002

Molecular Weight (calculated)

22588.9 Da

IEP (calculated)

9.691

GRAVY (calculated)

-0.854

Length

197 amino acids

Sequence
(BLAST)

001: MASTISQCTK KEANRGAWTA EEDHKLAQVI AVHGAKRWKC VAMKAGLKRC GKSCRLRWMN YLRPNIKRGN ISDQEQDLIL RLHKLLGNRW SLIAGRLPGR
101: TDNEIKNYWN SHLSKKTKQK EKQSRSSTTV ECRPQKTKVM EMESVDNGSE RVASKGDEDS KTSFVGDESF DYSSEGPLNL EWMSKFLEMD EAWLDFA

Best Arabidopsis Sequence Match ( AT5G14750.1 )
(BLAST)

001: MRKKVSSSGD EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF

Arabidopsis Description

WERWER1 [Source:UniProtKB/TrEMBL;Acc:A0A178UJM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.