Factsheet for VIT_17s0000g08480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0066g01220.t01	Wine grape	nucleus	54.17	53.92
VIT_01s0127g00730.t01	Wine grape	nucleus	52.78	51.82
VIT_17s0000g02650.t01	Wine grape	nucleus	33.33	43.64
VIT_04s0008g01870.t01	Wine grape	nucleus	33.33	36.55
VIT_09s0002g01380.t01	Wine grape	nucleus	33.33	35.47
VIT_14s0006g01620.t01	Wine grape	nucleus	35.19	33.33
VIT_17s0000g02660.t01	Wine grape	nucleus	35.19	33.19
VIT_11s0016g05660.t01	Wine grape	nucleus	34.26	33.18
VIT_01s0011g04760.t01	Wine grape	nucleus	34.26	32.89
VIT_04s0008g01840.t01	Wine grape	nucleus	33.33	31.86
VIT_11s0016g05690.t01	Wine grape	nucleus	32.87	31.84
VIT_11s0016g01310.t01	Wine grape	nucleus	32.41	31.82
GSMUA_Achr3P07950_001	Banana	nucleus	34.72	31.51
VIT_04s0023g03710.t01	Wine grape	nucleus	34.26	30.58
VIT_18s0117g00200.t01	Wine grape	nucleus	32.87	30.47
VIT_03s0038g02310.t01	Wine grape	nucleus	35.19	30.28
VIT_04s0008g01800.t01	Wine grape	nucleus	36.57	29.81
GSMUA_Achr3P27700_001	Banana	nucleus	36.57	28.83
VIT_13s0084g00530.t01	Wine grape	nucleus	34.72	28.52
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	40.74	28.21
VIT_04s0008g01810.t01	Wine grape	nucleus	35.65	27.9
VIT_18s0117g00210.t01	Wine grape	nucleus	32.87	27.52
VIT_08s0007g07230.t01	Wine grape	nucleus	40.74	27.5
VIT_11s0016g01320.t01	Wine grape	nucleus	35.65	27.11
VIT_15s0046g00170.t01	Wine grape	nucleus	35.65	26.92
VIT_04s0008g01820.t01	Wine grape	nucleus	36.57	26.6
VIT_11s0016g01300.t01	Wine grape	nucleus	36.57	26.25
VIT_04s0008g01830.t01	Wine grape	nucleus	33.8	25.89
VIT_07s0130g00040.t01	Wine grape	nucleus	34.72	25.86
VIT_09s0002g01410.t01	Wine grape	nucleus	34.26	25.0
VIT_09s0002g01400.t01	Wine grape	nucleus	35.65	22.45
VIT_07s0005g01210.t01	Wine grape	nucleus	32.87	19.35
VIT_05s0077g01360.t01	Wine grape	nucleus	30.09	16.97

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100244963	wikigene:100244963	MapMan:15.5.2.1	EMBL:AM460166	ProteinID:CAN70191
ProteinID:CAN70191.1	ProteinID:CBI15023	ProteinID:CBI15023.3	UniProt:D7SHR3	EMBL:FN594950	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100244963	wikigene:LOC100244963	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF675	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC62820	UniParc:UPI00015C8F09	ArrayExpress:VIT_17s0000g08480	EnsemblPlantsGene:VIT_17s0000g08480	EnsemblPlants:VIT_17s0000g08480.t01
unigene:Vvi.19387	RefSeq:XP_002279128	RefSeq:XP_002279128.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:9703427..9704324

Molecular Weight (calculated)

24545.0 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.823

Length

216 amino acids

Sequence
(BLAST)

001: MEGANGYRKG LWTVEEDRIL MDYIRVHGKG KWNRIAKVTG LKRCGKSCRL RWMNYLSPSV KRGDFSQEED DLIIRLHNLL GNRWSLIAGR VPGRTDNQVK
101: NHWNTHLSKK LGIKKHKSKS EGSSQAQSIE AKEAHSMPSN PDSKPPSEDK NGETGPEVRE DLPRSMTMLA NTQDMEMGTE DYESSLWFST GDLDLNAPSL
201: MQFLDGHVLD FVWDGL

Best Arabidopsis Sequence Match ( AT5G14750.1 )
(BLAST)

001: MRKKVSSSGD EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF

Arabidopsis Description

WERWER1 [Source:UniProtKB/TrEMBL;Acc:A0A178UJM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.