Factsheet for VIT_03s0038g02310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P24180_001	Banana	nucleus	55.38	80.35
Zm00001d022628_P001	Maize	nucleus	66.14	76.15
VIT_04s0023g03710.t01	Wine grape	nucleus	72.11	74.79
KRH29280	Soybean	nucleus	68.92	70.33
KRH24301	Soybean	nucleus	68.53	67.98
Os09t0538400-01	Rice	extracellular	67.33	67.33
TraesCS7B01G169900.1	Wheat	nucleus	62.55	66.81
HORVU7Hr1G057410.1	Barley	nucleus	62.95	66.39
TraesCS7D01G272400.1	Wheat	nucleus	61.75	66.24
EER99264	Sorghum	nucleus	68.92	65.53
EES14116	Sorghum	nucleus	67.33	65.5
TraesCS7A01G272100.1	Wheat	nucleus	61.75	64.58
Zm00001d032024_P001	Maize	nucleus	65.34	64.57
TraesCS5D01G335700.1	Wheat	nucleus	65.74	62.03
TraesCS5B01G330100.1	Wheat	nucleus	64.94	61.98
TraesCS5A01G329900.1	Wheat	nucleus	65.34	61.19
Zm00001d006236_P002	Maize	nucleus	66.14	60.81
HORVU5Hr1G083910.2	Barley	nucleus	64.54	60.22
Zm00001d053220_P001	Maize	nucleus	62.15	60.0
VIT_17s0000g02650.t01	Wine grape	nucleus	39.04	59.39
VIT_01s0011g04760.t01	Wine grape	nucleus	45.42	50.67
VIT_18s0117g00200.t01	Wine grape	nucleus	46.22	49.79
VIT_14s0006g01620.t01	Wine grape	nucleus	45.02	49.56
VIT_07s0130g00040.t01	Wine grape	nucleus	56.97	49.31
VIT_18s0117g00210.t01	Wine grape	nucleus	50.2	48.84
VIT_17s0000g02660.t01	Wine grape	nucleus	41.04	44.98
VIT_04s0008g01870.t01	Wine grape	nucleus	30.68	39.09
VIT_11s0016g01310.t01	Wine grape	nucleus	33.47	38.18
VIT_15s0046g00170.t01	Wine grape	nucleus	43.03	37.76
VIT_09s0002g01380.t01	Wine grape	nucleus	30.28	37.44
VIT_14s0066g01220.t01	Wine grape	nucleus	31.87	36.87
VIT_04s0008g01800.t01	Wine grape	nucleus	37.45	35.47
VIT_11s0016g05660.t01	Wine grape	nucleus	31.47	35.43
VIT_17s0000g08480.t01	Wine grape	nucleus	30.28	35.19
VIT_04s0008g01810.t01	Wine grape	nucleus	37.05	33.7
VIT_11s0016g05690.t01	Wine grape	nucleus	29.88	33.63
VIT_04s0008g01840.t01	Wine grape	nucleus	29.88	33.19
VIT_01s0127g00730.t01	Wine grape	nucleus	28.29	32.27
VIT_09s0002g01410.t01	Wine grape	nucleus	37.85	32.09
VIT_13s0084g00530.t01	Wine grape	nucleus	33.47	31.94
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	39.04	31.41
VIT_08s0007g07230.t01	Wine grape	nucleus	39.44	30.94
VIT_11s0016g01300.t01	Wine grape	nucleus	37.05	30.9
VIT_11s0016g01320.t01	Wine grape	nucleus	34.66	30.63
VIT_04s0008g01830.t01	Wine grape	nucleus	33.47	29.79
VIT_04s0008g01820.t01	Wine grape	nucleus	35.06	29.63
VIT_09s0002g01400.t01	Wine grape	nucleus	39.84	29.15
VIT_07s0005g01210.t01	Wine grape	nucleus	40.24	27.52
VIT_05s0077g01360.t01	Wine grape	nucleus	41.43	27.15

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233133	wikigene:100233133	MapMan:15.5.2.1	UniProt:A1E8L7	ProteinID:ABC54961
ProteinID:ABC54961.1	ProteinID:ABC54965	ProteinID:ABC54965.1	ProteinID:ABC54970	ProteinID:ABC54970.1	ProteinID:ABC54971
ProteinID:ABC54971.1	ProteinID:ABC54972	ProteinID:ABC54972.1	ProteinID:ABC54974	ProteinID:ABC54974.1	ProteinID:ABC54977
ProteinID:ABC54977.1	ProteinID:ABC54987	ProteinID:ABC54987.1	ProteinID:ABC54988	ProteinID:ABC54988.1	ProteinID:ABL61515
ProteinID:ABL61515.1	ProteinID:CCB60623	ProteinID:CCB60623.1	EMBL:DQ277654	EMBL:DQ277658	EMBL:DQ277664
EMBL:DQ277665	EMBL:DQ277666	EMBL:DQ277668	EMBL:DQ277671	EMBL:DQ277681	EMBL:DQ277683
EMBL:EF113078	EMBL:FN596508	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:MYB4A	wikigene:MYB4A	InterPro:Myb_dom	RefSeq:NP_001268129.1	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF741	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGR:TC53394
UniParc:UPI0000EA38F6	ArrayExpress:VIT_03s0038g02310	EnsemblPlantsGene:VIT_03s0038g02310	EnsemblPlants:VIT_03s0038g02310.t01	unigene:Vvi.3225	SEG:seg

Description

MYB4a protein [Source:UniProtKB/TrEMBL;Acc:A1E8L7]

Coordinates

chr3:-:1584039..1585078

Molecular Weight (calculated)

27765.0 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.588

Length

251 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLLNRG IDPSTHRPIN EPSPDVTTIS FAAAVKEEEK INISSTGGFG CKTEKNPVTE KCPDLNLELR ISPPYQPQAE TPLKTGGRSS
201: STTLCFACSL GIPNSEECSC SIGTSSGSSS SGYDFLGLTS GVLDYRGLEM K

Best Arabidopsis Sequence Match ( AT4G38620.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK

Arabidopsis Description

MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.