Factsheet for VIT_09s0002g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g02650.t01	Wine grape	nucleus	28.04	50.3
VIT_11s0016g01310.t01	Wine grape	nucleus	29.39	39.55
VIT_04s0008g01870.t01	Wine grape	nucleus	26.01	39.09
VIT_14s0006g01620.t01	Wine grape	nucleus	30.07	39.04
VIT_01s0011g04760.t01	Wine grape	nucleus	29.05	38.22
VIT_03s0038g02310.t01	Wine grape	nucleus	32.09	37.85
VIT_09s0002g01380.t01	Wine grape	nucleus	25.68	37.44
VIT_04s0023g03710.t01	Wine grape	nucleus	30.07	36.78
VIT_17s0000g02660.t01	Wine grape	nucleus	28.04	36.24
VIT_04s0008g01800.t01	Wine grape	nucleus	32.09	35.85
VIT_04s0008g01840.t01	Wine grape	nucleus	27.03	35.4
VIT_18s0117g00200.t01	Wine grape	nucleus	27.03	34.33
VIT_17s0000g08480.t01	Wine grape	nucleus	25.0	34.26
VIT_11s0016g01320.t01	Wine grape	nucleus	32.43	33.8
VIT_14s0066g01220.t01	Wine grape	nucleus	24.66	33.64
VIT_01s0127g00730.t01	Wine grape	nucleus	24.66	33.18
VIT_18s0117g00210.t01	Wine grape	nucleus	28.72	32.95
VIT_11s0016g05660.t01	Wine grape	nucleus	24.66	32.74
VIT_04s0008g01830.t01	Wine grape	nucleus	31.08	32.62
VIT_15s0046g00170.t01	Wine grape	nucleus	30.74	31.82
VIT_11s0016g01300.t01	Wine grape	nucleus	32.09	31.56
VIT_13s0084g00530.t01	Wine grape	nucleus	28.04	31.56
VIT_11s0016g05690.t01	Wine grape	nucleus	23.31	30.94
VIT_04s0008g01810.t01	Wine grape	nucleus	28.38	30.43
VIT_04s0008g01820.t01	Wine grape	nucleus	30.41	30.3
VIT_07s0130g00040.t01	Wine grape	nucleus	29.05	29.66
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	30.41	28.85
VIT_08s0007g07230.t01	Wine grape	nucleus	29.73	27.5
VIT_09s0002g01400.t01	Wine grape	nucleus	31.08	26.82
VIT_07s0005g01210.t01	Wine grape	nucleus	29.05	23.43
VIT_05s0077g01360.t01	Wine grape	nucleus	26.69	20.63

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100244575	wikigene:100244575	MapMan:15.5.2.1	ProteinID:CBI35881	ProteinID:CBI35881.3
UniProt:D7TZT5	EMBL:FN596494	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100244575	wikigene:LOC100244575	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF897	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BE4AAE	ArrayExpress:VIT_09s0002g01410
EnsemblPlantsGene:VIT_09s0002g01410	EnsemblPlants:VIT_09s0002g01410.t01	RefSeq:XP_002274017	RefSeq:XP_002274017.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:1176542..1187762

Molecular Weight (calculated)

33656.3 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.384

Length

296 amino acids

Sequence
(BLAST)

001: MGRSPSFADV GLIRGAWSMQ EDEVLINYIR VHGEGNWKSL AQKSGLKRCG KSCRLRWLNY LRPGLKRGSF SPDEEELIIK LHRLLGNRWA LIAGRLPGRT
101: DNEIKNYWNT TLCKRLRGDQ KIEKKPVDNS ATLDSPQPIR TKAFRCQRVI ISTHKEESHL MNKDSDFISE TGHLPSTSTS TLLHDSSINF LIDSYDVPAA
201: LDPYFLQIPS YKMQENAISS SFSDCYLSED ELLVQNRISY EPPQLTWALE LKKNFCLSVG ASFRVLLPLH CPVVSTNFQE YAEKGSLREL VCAAMI

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.