Factsheet for VIT_14s0066g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_15s0046g01130.t01
VIT_16s0050g02530.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27920.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT3G27920.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT3G27920.1	VIT_15s0046g01130.t01	AT5G53200.1	14561633
AT3G27920.1	VIT_16s0050g02530.t01	AT5G53200.1	14561633
AT5G14750.1	VIT_02s0025g03450.t01	AT1G63650.1	14627722
AT5G14750.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT5G14750.1	VIT_02s0025g03450.t01	AT1G63650.1	17644729
AT5G40330.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008740.1-P	Field mustard	nucleus	54.38	59.9
CDX69561	Canola	nucleus	54.38	59.9
CDY09882	Canola	nucleus	53.46	58.59
CDX85583	Canola	nucleus	52.53	57.58
CDX91023	Canola	nucleus	52.07	57.07
AT5G14750.1	Thale cress	nucleus	53.0	56.65
Bra023486.1-P	Field mustard	nucleus	48.39	55.85
VIT_17s0000g08480.t01	Wine grape	nucleus	53.92	54.17
AT5G40330.1	Thale cress	nucleus	52.07	51.6
CDY66972	Canola	nucleus	45.16	49.0
VIT_01s0127g00730.t01	Wine grape	nucleus	48.39	47.73
Bra025311.1-P	Field mustard	nucleus	48.39	46.67
CDX86461	Canola	nucleus	48.39	46.67
AT3G27920.1	Thale cress	nucleus	48.85	46.49
Bra039065.1-P	Field mustard	nucleus	41.47	45.23
CDY44571	Canola	nucleus	52.07	44.31
Bra025589.1-P	Field mustard	nucleus	52.07	44.31
VIT_17s0000g02650.t01	Wine grape	nucleus	33.64	44.24
VIT_17s0000g02660.t01	Wine grape	nucleus	38.25	36.24
VIT_04s0008g01870.t01	Wine grape	nucleus	32.26	35.53
VIT_09s0002g01380.t01	Wine grape	nucleus	33.18	35.47
VIT_11s0016g05660.t01	Wine grape	nucleus	36.41	35.43
VIT_14s0006g01620.t01	Wine grape	nucleus	36.41	34.65
VIT_11s0016g05690.t01	Wine grape	nucleus	35.02	34.08
VIT_01s0011g04760.t01	Wine grape	nucleus	35.02	33.78
GSMUA_Achr3P07950_001	Banana	nucleus	36.87	33.61
VIT_04s0008g01840.t01	Wine grape	nucleus	34.56	33.19
VIT_03s0038g02310.t01	Wine grape	nucleus	36.87	31.87
VIT_04s0023g03710.t01	Wine grape	nucleus	35.48	31.82
VIT_11s0016g01310.t01	Wine grape	nucleus	31.34	30.91
VIT_18s0117g00200.t01	Wine grape	nucleus	32.72	30.47
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	42.86	29.81
GSMUA_Achr3P27700_001	Banana	nucleus	36.87	29.2
VIT_08s0007g07230.t01	Wine grape	nucleus	42.86	29.06
VIT_04s0008g01800.t01	Wine grape	nucleus	35.02	28.68
VIT_18s0117g00210.t01	Wine grape	nucleus	33.64	28.29
VIT_07s0130g00040.t01	Wine grape	nucleus	37.79	28.28
VIT_13s0084g00530.t01	Wine grape	nucleus	33.18	27.38
VIT_15s0046g00170.t01	Wine grape	nucleus	35.94	27.27
VIT_04s0008g01810.t01	Wine grape	nucleus	34.1	26.81
VIT_11s0016g01320.t01	Wine grape	nucleus	35.02	26.76
VIT_04s0008g01820.t01	Wine grape	nucleus	35.94	26.26
VIT_11s0016g01300.t01	Wine grape	nucleus	36.41	26.25
VIT_04s0008g01830.t01	Wine grape	nucleus	33.64	25.89
VIT_09s0002g01410.t01	Wine grape	nucleus	33.64	24.66
VIT_09s0002g01400.t01	Wine grape	nucleus	35.02	22.16
VIT_07s0005g01210.t01	Wine grape	nucleus	32.72	19.35
VIT_05s0077g01360.t01	Wine grape	nucleus	31.8	18.02

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:104881670	MapMan:15.5.2.1	ProteinID:CCB58512	ProteinID:CCB58512.1	UniProt:F6HUZ4
EMBL:FN596252	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF625	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC63604	UniParc:UPI00015C9274	ArrayExpress:VIT_14s0066g01220	EnsemblPlantsGene:VIT_14s0066g01220	EnsemblPlants:VIT_14s0066g01220.t01
unigene:Vvi.15933	RefSeq:XP_010660913.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:27708124..27709246

Molecular Weight (calculated)

24547.1 Da

IEP (calculated)

8.612

GRAVY (calculated)

-0.736

Length

217 amino acids

Sequence
(BLAST)

001: MEEVNQYKKG LWTLEEDKIL MDYVKEHGKG QWNRIAKKTG LRRCGKSCRL RWINYLSPNV KRGDFTAEEE DLIIRLHKLL GNRWSLIAGR VPGRTDNQVK
101: NYWNTHLSKK LGIKKKNNGA NVSSTLTNTR EMQKGSEPLM NSSSSPSCGS SRGAAEAKAN EGTLQQSLEA PDWHDQLVIG EGYLDSFWAI NDDLELTTDS
201: IMEFLNGCSL DLGRHGF

Best Arabidopsis Sequence Match ( AT5G40330.1 )
(BLAST)

001: MRMTRDGKEH EYKKGLWTVE EDKILMDYVR THGQGHWNRI AKKTGLKRCG KSCRLRWMNY LSPNVNRGNF TDQEEDLIIR LHKLLGNRWS LIAKRVPGRT
101: DNQVKNYWNT HLSKKLGLGD HSTAVKAACG VESPPSMALI TTTSSSHQEI SGGKNSTLRF DTLVDESKLK PKSKLVHATP TDVEVAATVP NLFDTFWVLE
201: DDFELSSLTM MDFTNGYCL

Arabidopsis Description

MYB23Transcription factor MYB23 [Source:UniProtKB/Swiss-Prot;Acc:Q96276]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.