Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86461 | Canola | nucleus | 78.07 | 79.11 |
| Bra025311.1-P | Field mustard | nucleus | 78.07 | 79.11 |
| Bra039065.1-P | Field mustard | nucleus | 62.28 | 71.36 |
| AT5G40330.1 | Thale cress | nucleus | 58.33 | 60.73 |
| AT5G14750.1 | Thale cress | nucleus | 53.51 | 60.1 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 46.49 | 48.85 |
| AT5G52600.1 | Thale cress | nucleus | 32.89 | 37.31 |
| AT1G35515.1 | Thale cress | nucleus | 30.7 | 33.02 |
| AT3G13540.1 | Thale cress | nucleus | 35.09 | 32.13 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 32.46 | 31.09 |
| AT4G09460.1 | Thale cress | nucleus | 31.14 | 30.08 |
| AT1G22640.1 | Thale cress | nucleus | 32.89 | 29.18 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 34.21 | 28.47 |
| AT2G16720.1 | Thale cress | nucleus | 30.7 | 26.02 |
| AT4G38620.1 | Thale cress | nucleus | 32.02 | 25.89 |
| AT4G34990.1 | Thale cress | nucleus | 30.7 | 25.55 |
| AT5G35550.2 | Thale cress | nucleus | 25.88 | 22.61 |
| AT5G49330.1 | Thale cress | nucleus | 30.7 | 20.47 |
| AT3G62610.1 | Thale cress | nucleus | 28.51 | 18.95 |
| AT2G47460.1 | Thale cress | nucleus | 29.39 | 18.06 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:822415 | ProteinID:AAC97387.1 | ProteinID:AAC97388.1 | ProteinID:AAL01215.1 |
| ProteinID:AAL01216.1 | ProteinID:AAL01217.1 | ProteinID:AAL01218.1 | ProteinID:AAL01219.1 | ProteinID:AAL01220.1 | ProteinID:AAL01221.1 |
| ProteinID:AAL01222.1 | ProteinID:AAL01223.1 | ProteinID:AAL01224.1 | ProteinID:AAL01225.1 | ProteinID:AAL01226.1 | ProteinID:AAL01227.1 |
| ProteinID:AAL01228.1 | ProteinID:AAL01229.1 | ProteinID:AAL01230.1 | ProteinID:AAL01231.1 | ProteinID:AAL01232.1 | ProteinID:AAL01233.1 |
| ProteinID:AAL01234.1 | ProteinID:AAL01235.1 | ProteinID:AAL01236.1 | ProteinID:AAL01237.1 | ProteinID:AAL01238.1 | ProteinID:AAL01239.1 |
| ProteinID:AAL01240.1 | ProteinID:AAL01243.1 | ProteinID:AAL01244.1 | ProteinID:AEE77380.1 | EMBL:AF495524 | ProteinID:AFD93993.1 |
| ProteinID:AFD93994.1 | ProteinID:AFD93996.1 | ProteinID:AFD93997.1 | ProteinID:AFD94002.1 | ProteinID:AFD94003.1 | ProteinID:AFD94004.1 |
| ProteinID:AFD94005.1 | ProteinID:AFD94006.1 | ProteinID:AFD94007.1 | ProteinID:AFD94008.1 | ProteinID:AFD94009.1 | ProteinID:AFD94010.1 |
| ProteinID:AFD94011.1 | ProteinID:AFD94012.1 | ProteinID:AFD94013.1 | ProteinID:AFD94017.1 | ProteinID:AFD94018.1 | ProteinID:AFD94019.1 |
| ProteinID:AFD94020.1 | ProteinID:AFD94021.1 | ArrayExpress:AT3G27920 | EnsemblPlantsGene:AT3G27920 | RefSeq:AT3G27920 | TAIR:AT3G27920 |
| RefSeq:AT3G27920-TAIR-G | EnsemblPlants:AT3G27920.1 | TAIR:AT3G27920.1 | EMBL:AY519590 | ProteinID:BAA86879.1 | ProteinID:BAB02538.1 |
| ProteinID:CAB97484.1 | ProteinID:CAB97485.1 | Symbol:GL1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0001708 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007267 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009740 |
| GO:GO:0009867 | GO:GO:0009987 | GO:GO:0010026 | GO:GO:0016043 | GO:GO:0030154 | GO:GO:0032880 |
| GO:GO:0043565 | GO:GO:0044212 | GO:GO:0048629 | GO:GO:2000039 | InterPro:Homeobox-like_sf | UniProt:I6P6H3 |
| InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_189430.1 | UniProt:P27900 | PFAM:PF00249 | PO:PO:0000037 |
| PO:PO:0001078 | PO:PO:0007611 | PO:PO:0009006 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009046 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF625 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000000110C | : | : | : | : | : |
Description
GL1Trichome differentiation protein GL1 [Source:UniProtKB/Swiss-Prot;Acc:P27900]
Coordinates
chr3:-:10361790..10363607
Molecular Weight (calculated)
26339.9 Da
IEP (calculated)
7.178
GRAVY (calculated)
-0.782
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIRRRDEKE NQEYKKGLWT VEEDNILMDY VLNHGTGQWN RIVRKTGLKR CGKSCRLRWM NYLSPNVNKG NFTEQEEDLI IRLHKLLGNR WSLIAKRVPG
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL
101: RTDNQVKNYW NTHLSKKLVG DYSSAVKTTG EDDDSPPSLF ITAATPSSCH HQQENIYENI AKSFNGVVSA SYEDKPKQEL AQKDVLMATT NDPSHYYGNN
201: ALWVHDDDFE LSSLVMMNFA SGDVEYCL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.