Factsheet for AT5G40330.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44571	Canola	nucleus	80.82	69.41
Bra025589.1-P	Field mustard	nucleus	80.82	69.41
AT5G14750.1	Thale cress	nucleus	57.53	62.07
AT3G27920.1	Thale cress	nucleus	60.73	58.33
VIT_14s0066g01220.t01	Wine grape	nucleus	51.6	52.07
AT5G52600.1	Thale cress	nucleus	35.16	38.31
AT3G13540.1	Thale cress	nucleus	38.36	33.73
AT1G35515.1	Thale cress	nucleus	32.42	33.49
GSMUA_Achr3P07950_001	Banana	nucleus	34.7	31.93
AT4G09460.1	Thale cress	nucleus	33.33	30.93
AT1G22640.1	Thale cress	nucleus	34.7	29.57
GSMUA_Achr3P27700_001	Banana	nucleus	33.79	27.01
AT2G16720.1	Thale cress	nucleus	31.96	26.02
AT4G34990.1	Thale cress	nucleus	32.42	25.91
AT4G38620.1	Thale cress	nucleus	32.42	25.18
AT5G35550.2	Thale cress	nucleus	27.4	22.99
AT5G49330.1	Thale cress	nucleus	32.88	21.05
AT3G62610.1	Thale cress	nucleus	30.59	19.53
AT2G47460.1	Thale cress	nucleus	31.96	18.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:834031	UniProt:A0A178UNZ5	ProteinID:AED94534.1	ArrayExpress:AT5G40330
EnsemblPlantsGene:AT5G40330	RefSeq:AT5G40330	TAIR:AT5G40330	RefSeq:AT5G40330-TAIR-G	EnsemblPlants:AT5G40330.1	TAIR:AT5G40330.1
EMBL:AY519631	Unigene:At.5400	ProteinID:BAB11588.1	EMBL:BT025285	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0010026	GO:GO:0010053	GO:GO:0010091	GO:GO:0016043
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	Symbol:MYB23
InterPro:Myb_dom	RefSeq:NP_198849.1	ProteinID:OAO94702.1	PFAM:PF00249	PO:PO:0000013	PO:PO:0000037
PO:PO:0000263	PO:PO:0000293	PO:PO:0001054	PO:PO:0006504	PO:PO:0007064	PO:PO:0007115
PO:PO:0009005	PO:PO:0009006	PO:PO:0009010	PO:PO:0009025	PO:PO:0009046	PO:PO:0009047
PO:PO:0020038	PO:PO:0025022	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF625	UniProt:Q96276
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00000AC7AA	EMBL:Z68158	EMBL:Z95747

Description

MYB23Transcription factor MYB23 [Source:UniProtKB/Swiss-Prot;Acc:Q96276]

Coordinates

chr5:+:16127725..16129661

Molecular Weight (calculated)

24944.8 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.596

Length

219 amino acids

Sequence
(BLAST)

001: MRMTRDGKEH EYKKGLWTVE EDKILMDYVR THGQGHWNRI AKKTGLKRCG KSCRLRWMNY LSPNVNRGNF TDQEEDLIIR LHKLLGNRWS LIAKRVPGRT
101: DNQVKNYWNT HLSKKLGLGD HSTAVKAACG VESPPSMALI TTTSSSHQEI SGGKNSTLRF DTLVDESKLK PKSKLVHATP TDVEVAATVP NLFDTFWVLE
201: DDFELSSLTM MDFTNGYCL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.