Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40330.1 | CDY08314 | AT1G63650.1 | 15361138 |
| AT5G40330.1 | CDY25513 | AT1G63650.1 | 15361138 |
| AT5G40330.1 | CDY34367 | AT1G63650.1 | 15361138 |
| AT5G40330.1 | CDY72121 | AT1G63650.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025589.1-P | Field mustard | nucleus | 99.22 | 99.22 |
| AT5G40330.1 | Thale cress | nucleus | 69.41 | 80.82 |
| CDY09882 | Canola | nucleus | 50.2 | 64.65 |
| CDX69561 | Canola | nucleus | 49.8 | 64.47 |
| CDX85583 | Canola | nucleus | 49.41 | 63.64 |
| CDX91023 | Canola | nucleus | 49.02 | 63.13 |
| CDY66972 | Canola | nucleus | 43.92 | 56.0 |
| CDX86461 | Canola | nucleus | 48.24 | 54.67 |
| VIT_14s0066g01220.t01 | Wine grape | nucleus | 44.31 | 52.07 |
| CDY27055 | Canola | nucleus | 29.02 | 37.37 |
| CDY56151 | Canola | nucleus | 28.63 | 36.68 |
| CDY65324 | Canola | nucleus | 29.02 | 36.45 |
| CDY51833 | Canola | nucleus | 28.24 | 36.18 |
| CDY23616 | Canola | nucleus | 32.16 | 35.96 |
| CDY07085 | Canola | nucleus | 34.51 | 35.06 |
| CDY24177 | Canola | nucleus | 33.73 | 34.26 |
| CDY59254 | Canola | nucleus | 32.94 | 32.94 |
| CDX91687 | Canola | nucleus | 28.63 | 32.44 |
| CDY05057 | Canola | nucleus | 28.63 | 32.16 |
| GSMUA_Achr3P07950_001 | Banana | nucleus | 29.8 | 31.93 |
| CDX90721 | Canola | nucleus | 27.84 | 31.7 |
| CDY25747 | Canola | nucleus | 29.41 | 28.41 |
| GSMUA_Achr3P27700_001 | Banana | nucleus | 29.8 | 27.74 |
| CDX84119 | Canola | nucleus | 28.24 | 27.59 |
| CDY12520 | Canola | nucleus | 29.41 | 27.57 |
| CDY21378 | Canola | nucleus | 29.02 | 27.51 |
| CDY04798 | Canola | nucleus | 29.02 | 27.51 |
| CDY49363 | Canola | nucleus | 27.84 | 27.2 |
| CDX90285 | Canola | nucleus | 28.63 | 25.8 |
| CDX72510 | Canola | nucleus | 27.06 | 25.46 |
| CDY40652 | Canola | nucleus | 27.06 | 25.46 |
| CDX72743 | Canola | nucleus | 29.02 | 25.17 |
| CDY22416 | Canola | nucleus | 29.02 | 25.17 |
| CDY05636 | Canola | nucleus | 27.45 | 24.14 |
| CDX69102 | Canola | nucleus | 27.06 | 24.13 |
| CDX75478 | Canola | nucleus | 27.06 | 24.04 |
| CDY52797 | Canola | nucleus | 24.31 | 24.03 |
| CDY12092 | Canola | nucleus | 28.24 | 23.68 |
| CDY02243 | Canola | nucleus | 26.27 | 23.34 |
| CDY72116 | Canola | nucleus | 26.27 | 23.34 |
| CDY00035 | Canola | nucleus | 26.67 | 20.61 |
| CDX86237 | Canola | nucleus | 27.45 | 20.41 |
| CDX85403 | Canola | nucleus | 26.67 | 19.88 |
| CDY49609 | Canola | nucleus | 27.06 | 19.77 |
| CDX83327 | Canola | nucleus | 27.06 | 19.6 |
| CDX95725 | Canola | nucleus | 26.67 | 19.26 |
| CDY55384 | Canola | nucleus | 19.61 | 16.95 |
| CDX80105 | Canola | nucleus | 19.22 | 14.98 |
| CDY27486 | Canola | plastid | 3.53 | 3.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078I3Y5 | UniProt:A0A078I3Y5 | EnsemblPlants:CDY44571 | ProteinID:CDY44571 |
| ProteinID:CDY44571.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0010026 | GO:GO:0010053 | GO:GO:0010091 | GO:GO:0016043 | GO:GO:0030154 |
| EnsemblPlantsGene:GSBRNA2T00080488001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF625 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDCEA7 |
Description
BnaA04g10190DTranscription factor MYB23 [Source:Projected from Arabidopsis thaliana (AT5G40330) UniProtKB/Swiss-Prot;Acc:Q96276]
Coordinates
chrLK032595:-:29876..32634
Molecular Weight (calculated)
29235.6 Da
IEP (calculated)
7.869
GRAVY (calculated)
-0.573
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRLRSCHSS DNYIYSIEIH LFESSDQKSH SVLRCEYKKG LWTVEEDKIL MDYVRTHGQG HWNRIAKKTG LKRCGKSCRL RWMNYLSPSV NRGNFTDQEE
101: DLIIRLHKLL GNRWSLIAKR VPGRTDNQVK NYWNTHLSKK LGLGDHSYEA KPACDTETPA SLVITTTKTS SPPSLVVTTI TSHQDVGDEK VSTIRFDTTD
201: DDSKLNTKSK PVYSIQPDVE VAATIPNLFD TFWVLEDNFD LSSLTMMDFA NGYCL
101: DLIIRLHKLL GNRWSLIAKR VPGRTDNQVK NYWNTHLSKK LGLGDHSYEA KPACDTETPA SLVITTTKTS SPPSLVVTTI TSHQDVGDEK VSTIRFDTTD
201: DDSKLNTKSK PVYSIQPDVE VAATIPNLFD TFWVLEDNFD LSSLTMMDFA NGYCL
001: MRMTRDGKEH EYKKGLWTVE EDKILMDYVR THGQGHWNRI AKKTGLKRCG KSCRLRWMNY LSPNVNRGNF TDQEEDLIIR LHKLLGNRWS LIAKRVPGRT
101: DNQVKNYWNT HLSKKLGLGD HSTAVKAACG VESPPSMALI TTTSSSHQEI SGGKNSTLRF DTLVDESKLK PKSKLVHATP TDVEVAATVP NLFDTFWVLE
201: DDFELSSLTM MDFTNGYCL
101: DNQVKNYWNT HLSKKLGLGD HSTAVKAACG VESPPSMALI TTTSSSHQEI SGGKNSTLRF DTLVDESKLK PKSKLVHATP TDVEVAATVP NLFDTFWVLE
201: DDFELSSLTM MDFTNGYCL
Arabidopsis Description
MYB23Transcription factor MYB23 [Source:UniProtKB/Swiss-Prot;Acc:Q96276]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.