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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69561
CDX72770
CDX80016
CDX80085
CDX80449
CDX83366
CDX85583
CDX86461
CDX91023
CDX95420
CDX95700
CDX96151
CDX96296
CDY03705
CDY05440
CDY07085
CDY08314
CDY09882
CDY19687
CDY19688
CDY23616
CDY24177
CDY25513
CDY27504
CDY34367
CDY38006
CDY38733
CDY42045
CDY44571
CDY47058
CDY49630
CDY52811
CDY53214
CDY55040
CDY58386
CDY58661
CDY59254
CDY70737
CDY72006
CDY72121
CDY72660

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63650.1 CDY38006 AT1G01380.1 15361138
AT1G63650.1 CDY52811 AT1G01380.1 15361138
AT1G63650.1 CDX96151 AT1G56650.1 12917293
AT1G63650.1 CDY49630 AT1G56650.1 12917293
AT1G63650.1 CDY53214 AT1G56650.1 12917293
AT1G63650.1 CDY55040 AT1G56650.1 12917293
AT1G63650.1 CDY58386 AT1G56650.1 12917293
AT1G63650.1 CDY70737 AT1G56650.1 12917293
AT1G63650.1 CDY72006 AT1G56650.1 12917293
AT1G63650.1 CDY72660 AT1G56650.1 12917293
AT1G63650.1 CDX96151 AT1G56650.1 15361138
AT1G63650.1 CDY49630 AT1G56650.1 15361138
AT1G63650.1 CDY53214 AT1G56650.1 15361138
AT1G63650.1 CDY55040 AT1G56650.1 15361138
AT1G63650.1 CDY58386 AT1G56650.1 15361138
AT1G63650.1 CDY70737 AT1G56650.1 15361138
AT1G63650.1 CDY72006 AT1G56650.1 15361138
AT1G63650.1 CDY72660 AT1G56650.1 15361138
AT1G63650.1 CDY08314 AT1G63650.1 12917293
AT1G63650.1 CDY25513 AT1G63650.1 12917293
AT1G63650.1 CDY34367 AT1G63650.1 12917293
AT1G63650.1 CDY72121 AT1G63650.1 12917293
AT1G63650.1 CDX96151 AT1G66370.1 15361138
AT1G63650.1 CDY49630 AT1G66370.1 15361138
AT1G63650.1 CDY53214 AT1G66370.1 15361138
AT1G63650.1 CDY55040 AT1G66370.1 15361138
AT1G63650.1 CDY58386 AT1G66370.1 15361138
AT1G63650.1 CDY70737 AT1G66370.1 15361138
AT1G63650.1 CDY72006 AT1G66370.1 15361138
AT1G63650.1 CDY72660 AT1G66370.1 15361138
AT1G63650.1 CDX96151 AT1G66380.1 15361138
AT1G63650.1 CDY49630 AT1G66380.1 15361138
AT1G63650.1 CDY53214 AT1G66380.1 15361138
AT1G63650.1 CDY55040 AT1G66380.1 15361138
AT1G63650.1 CDY58386 AT1G66380.1 15361138
AT1G63650.1 CDY70737 AT1G66380.1 15361138
AT1G63650.1 CDY72006 AT1G66380.1 15361138
AT1G63650.1 CDY72660 AT1G66380.1 15361138
AT1G63650.1 CDX96151 AT1G66390.1 12917293
AT1G63650.1 CDY49630 AT1G66390.1 12917293
AT1G63650.1 CDY53214 AT1G66390.1 12917293
AT1G63650.1 CDY55040 AT1G66390.1 12917293
AT1G63650.1 CDY58386 AT1G66390.1 12917293
AT1G63650.1 CDY70737 AT1G66390.1 12917293
AT1G63650.1 CDY72006 AT1G66390.1 12917293
AT1G63650.1 CDY72660 AT1G66390.1 12917293
AT1G63650.1 CDX96151 AT1G66390.1 15361138
AT1G63650.1 CDY49630 AT1G66390.1 15361138
AT1G63650.1 CDY53214 AT1G66390.1 15361138
AT1G63650.1 CDY55040 AT1G66390.1 15361138
AT1G63650.1 CDY58386 AT1G66390.1 15361138
AT1G63650.1 CDY70737 AT1G66390.1 15361138
AT1G63650.1 CDY72006 AT1G66390.1 15361138
AT1G63650.1 CDY72660 AT1G66390.1 15361138
AT1G63650.1 CDX72770 AT1G71030.1 15361138
AT1G63650.1 CDX96296 AT1G71030.1 15361138
AT1G63650.1 CDY03705 AT1G71030.1 15361138
AT1G63650.1 CDX80016 AT2G46410.1 12917293
AT1G63650.1 CDX83366 AT2G46410.1 12917293
AT1G63650.1 CDX95700 AT2G46410.1 12917293
AT1G63650.1 CDY42045 AT2G46410.1 12917293
AT1G63650.1 CDX80016 AT2G46410.1 14627722
AT1G63650.1 CDX83366 AT2G46410.1 14627722
AT1G63650.1 CDX95700 AT2G46410.1 14627722
AT1G63650.1 CDY42045 AT2G46410.1 14627722
AT1G63650.1 CDX80016 AT2G46410.1 15361138
AT1G63650.1 CDX83366 AT2G46410.1 15361138
AT1G63650.1 CDX95700 AT2G46410.1 15361138
AT1G63650.1 CDY42045 AT2G46410.1 15361138
AT1G63650.1 CDX80085 AT2G47190.1 12056412
AT1G63650.1 CDX95420 AT2G47190.1 12056412
AT1G63650.1 CDY27504 AT2G47190.1 12056412
AT1G63650.1 CDY07085 AT3G13540.1 15361138
AT1G63650.1 CDY23616 AT3G13540.1 15361138
AT1G63650.1 CDY24177 AT3G13540.1 15361138
AT1G63650.1 CDY59254 AT3G13540.1 15361138
AT1G63650.1 CDX86461 AT3G27920.1 12917293
AT1G63650.1 CDX86461 AT3G27920.1 15361138
AT1G63650.1 CDX69561 AT5G14750.1 14627722
AT1G63650.1 CDX85583 AT5G14750.1 14627722
AT1G63650.1 CDX91023 AT5G14750.1 14627722
AT1G63650.1 CDY09882 AT5G14750.1 14627722
AT1G63650.1 CDX69561 AT5G14750.1 15361138
AT1G63650.1 CDX85583 AT5G14750.1 15361138
AT1G63650.1 CDX91023 AT5G14750.1 15361138
AT1G63650.1 CDY09882 AT5G14750.1 15361138
AT1G63650.1 CDX69561 AT5G14750.1 17644729
AT1G63650.1 CDX85583 AT5G14750.1 17644729
AT1G63650.1 CDX91023 AT5G14750.1 17644729
AT1G63650.1 CDY09882 AT5G14750.1 17644729
AT1G63650.1 CDX80449 AT5G24520.1 12917293
AT1G63650.1 CDY05440 AT5G24520.1 12917293
AT1G63650.1 CDY44571 AT5G40330.1 15361138
AT1G63650.1 CDY19687 AT5G53200.1 12917293
AT1G63650.1 CDY19688 AT5G53200.1 12917293
AT1G63650.1 CDY38733 AT5G53200.1 12917293
AT1G63650.1 CDY47058 AT5G53200.1 12917293
AT1G63650.1 CDY58661 AT5G53200.1 12917293
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027796.1-P Field mustard nucleus 100.0 50.83
CDY08314 Canola nucleus 97.4 49.59
CDY34367 Canola nucleus 86.69 44.8
CDY25513 Canola nucleus 83.12 44.37
AT1G63650.1 Thale cress nucleus 83.12 42.95
CDY39747 Canola nucleus 62.99 34.7
CDY58950 Canola nucleus 63.31 33.8
PGSC0003DMT400032140 Potato nucleus 36.69 31.39
CDX77696 Canola nucleus 9.09 23.33
VIT_02s0025g03450.t01 Wine grape nucleus 42.86 21.02
GSMUA_Achr11P... Banana nucleus 30.84 20.17
CDY70013 Canola nucleus 15.91 19.44
GSMUA_Achr8P11430_001 Banana nucleus 33.77 19.05
GSMUA_Achr11P... Banana nucleus 33.77 18.84
GSMUA_Achr11P... Banana nucleus 35.71 18.55
Solyc08g081140.2.1 Tomato nucleus 36.36 17.89
CDX89627 Canola nucleus 14.94 17.23
CDX93135 Canola nucleus 14.94 17.23
GSMUA_Achr5P20600_001 Banana nucleus 31.82 16.67
CDY70506 Canola nucleus 28.25 16.29
CDX91907 Canola nucleus 27.92 15.81
CDY51155 Canola mitochondrion, nucleus 27.6 15.68
CDY07214 Canola mitochondrion, nucleus 26.95 15.31
CDY25629 Canola nucleus 14.61 15.0
CDY13737 Canola nucleus 14.29 14.92
CDX89512 Canola nucleus 14.29 14.86
CDY13735 Canola nucleus 13.64 14.53
CDX77699 Canola nucleus 12.66 14.39
CDY52593 Canola nucleus 12.99 14.04
CDY33482 Canola nucleus 12.34 14.02
CDX76899 Canola nucleus 14.61 13.93
CDX86891 Canola nucleus 23.38 13.82
CDX99505 Canola nucleus 23.38 13.82
CDX89511 Canola nucleus 14.29 13.71
CDX75679 Canola nucleus 14.61 13.39
CDY25628 Canola nucleus 13.96 13.35
CDX69336 Canola nucleus 14.29 13.02
CDY72199 Canola nucleus 13.96 12.87
CDY49678 Canola nucleus 13.96 12.87
CDY52591 Canola nucleus 12.66 12.38
CDX89513 Canola nucleus 12.99 12.31
CDY25630 Canola nucleus 12.99 12.31
CDY58502 Canola nucleus 17.21 11.8
CDX77688 Canola nucleus 17.21 11.73
CDY27319 Canola nucleus 16.56 11.51
CDY66312 Canola nucleus 15.91 10.7
CDX80023 Canola nucleus 16.56 10.47
CDY56874 Canola nucleus 16.23 10.18
CDY03185 Canola nucleus 15.58 10.15
CDY03195 Canola nucleus 16.88 9.54
CDX84081 Canola nucleus 15.91 9.26
CDX73261 Canola nucleus 13.31 9.26
CDY26910 Canola nucleus 13.31 9.26
CDY35179 Canola nucleus 16.88 9.25
CDY34468 Canola nucleus 13.31 9.09
CDX90021 Canola nucleus 15.91 9.07
CDY35183 Canola nucleus 14.94 9.07
CDY59973 Canola nucleus 14.94 9.04
CDY03183 Canola nucleus 14.94 9.04
CDY32242 Canola nucleus 12.99 8.87
CDX78808 Canola nucleus 15.91 8.46
CDY44507 Canola nucleus 15.91 8.36
CDX90525 Canola nucleus 12.01 8.11
CDY09695 Canola nucleus 12.01 7.6
CDX77694 Canola nucleus 1.3 1.58
CDY70012 Canola nucleus 0.0 0.0
CDY45357 Canola cytosol, golgi, nucleus 0.0 0.0
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:A0A078K2T1UniProt:A0A078K2T1EnsemblPlants:CDY72121ProteinID:CDY72121
ProteinID:CDY72121.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00024962001InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638PFAM:PF00010PFscan:PS50888
PANTHER:PTHR11514PANTHER:PTHR11514:SF28SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EE7F2EInterPro:bHLH_dom
Description
BnaAnng39960DBnaAnng39960D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K2T1]
Coordinates
chrLK049071:-:853..2291
Molecular Weight (calculated)
35156.9 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.650
Length
308 amino acids
Sequence
(BLAST)
001: GRVSCNPRKS RPQRLGQIQE QSNRLNMDDD VHYQGVISTI FKTAHQLVLG PQFQNFDKRS SFTRWRRLSL SAKTLGEKSQ SMLKKIVFEV PRMHQKELLL
101: PDTPEDNMFK IGDETGNHAL SERKRREKLN DRFMTLRSII PSISKIDKVS ILDDTIDYLQ ELQRRVQELE SCREYTDTEM QMPMKRKKPE DDDERASANC
201: LNTKRKESDV NVGEDEPADD TGYAGLTDNL SIGSFGNEVV IELRCAWREG ILLEIMDVIS HLNLDSHSVQ SSTGDGLLCL TVNCKHKGTN IATAGMIQEA
301: LQRVAWIC
Best Arabidopsis Sequence Match ( AT1G63650.1 )
(BLAST)
001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC
Arabidopsis Description
BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.