Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039763.1-P | Field mustard | nucleus | 98.39 | 98.39 |
| CDY58386 | Canola | nucleus, plastid | 98.39 | 98.39 |
| CDY72660 | Canola | nucleus | 46.99 | 89.31 |
| AT1G66380.1 | Thale cress | nucleus | 47.79 | 85.61 |
| CDY72006 | Canola | nucleus | 57.43 | 81.71 |
| AT1G66390.1 | Thale cress | nucleus | 77.51 | 77.51 |
| CDX96151 | Canola | nucleus | 76.71 | 77.33 |
| AT1G56650.1 | Thale cress | nucleus | 76.71 | 77.02 |
| CDY49630 | Canola | nucleus | 73.09 | 76.15 |
| CDY70737 | Canola | nucleus | 69.48 | 75.88 |
| AT1G66370.1 | Thale cress | nucleus | 66.67 | 67.48 |
| CDY53214 | Canola | nucleus | 72.69 | 65.34 |
| VIT_02s0033g00370.t01 | Wine grape | nucleus | 23.29 | 61.7 |
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 38.15 | 60.13 |
| KRH01212 | Soybean | nucleus | 38.15 | 50.26 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 45.78 | 46.91 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 40.16 | 44.64 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 43.37 | 44.44 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 39.36 | 43.75 |
| KRH40053 | Soybean | nucleus | 39.36 | 41.7 |
| KRH40047 | Soybean | nucleus | 39.36 | 41.53 |
| Solyc10g086260.1.1 | Tomato | nucleus | 45.38 | 41.24 |
| KRH01217 | Soybean | nucleus | 38.15 | 41.13 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 40.96 | 40.8 |
| Solyc10g086290.1.1 | Tomato | nucleus | 43.37 | 40.75 |
| Solyc10g086250.1.1 | Tomato | nucleus | 44.98 | 40.73 |
| KRH40049 | Soybean | nucleus | 38.55 | 40.51 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 32.13 | 40.2 |
| Solyc10g086270.1.1 | Tomato | nucleus | 41.77 | 40.15 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 37.35 | 38.91 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 40.96 | 38.49 |
| KRG93566 | Soybean | nucleus | 38.96 | 38.34 |
| PGSC0003DMT400036281 | Potato | extracellular | 21.69 | 25.96 |
| PGSC0003DMT400036284 | Potato | nucleus | 22.09 | 25.94 |
| KRH21221 | Soybean | nucleus | 20.08 | 21.28 |
| KRH40048 | Soybean | cytosol | 6.02 | 14.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IZV4 | UniProt:A0A078IZV4 | EnsemblPlants:CDY55040 | ProteinID:CDY55040 |
| ProteinID:CDY55040.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00015003001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF526 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EC6458 | SEG:seg |
Description
BnaCnng28030DBnaCnng28030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZV4]
Coordinates
chrLK033372:+:61456..63345
Molecular Weight (calculated)
28360.8 Da
IEP (calculated)
8.856
GRAVY (calculated)
-0.778
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSPKGLRK GAWTAEEDSL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKKGKLSSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPGCNTKM RKRNIPCSST QPAQKNEVLK PRPRSFTVNN GCSHFNGQPK VDVIPLFLGV NNTNNVCENS ITYKNDAEKY ELVNNLMDGE
201: NMWWKSLLEE SQEPGAIVPE STETEKLATS AFDVEQLWNL LDGETVEPD
101: KNYWNTHLSK KHEPGCNTKM RKRNIPCSST QPAQKNEVLK PRPRSFTVNN GCSHFNGQPK VDVIPLFLGV NNTNNVCENS ITYKNDAEKY ELVNNLMDGE
201: NMWWKSLLEE SQEPGAIVPE STETEKLATS AFDVEQLWNL LDGETVEPD
001: MEGSSKGLRK GAWTTEEDSL LRQCINKYGE GKWHQVPVRA GLNRCRKSCR LRWLNYLKPS IKRGKLSSDE VDLLLRLHRL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD
Arabidopsis Description
MYB75Transcription factor MYB75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.