Factsheet for PGSC0003DMT400036281

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
extracellular 2
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028052
PGSC0003DMT400028054
PGSC0003DMT400032140
PGSC0003DMT400033569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	PGSC0003DMT400032140	AT1G63650.1	12917293
AT1G56650.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G56650.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G56650.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G56650.1	PGSC0003DMT400033569	AT4G09820.1	15361138
AT1G56650.1	PGSC0003DMT400028052	AT4G09820.1	18532977
AT1G56650.1	PGSC0003DMT400028054	AT4G09820.1	18532977
AT1G56650.1	PGSC0003DMT400033569	AT4G09820.1	18532977
AT1G66370.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G66370.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G66370.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G66370.1	PGSC0003DMT400033569	AT4G09820.1	15361138
AT1G66380.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G66380.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G66380.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G66380.1	PGSC0003DMT400033569	AT4G09820.1	15361138
AT1G66390.1	PGSC0003DMT400032140	AT1G63650.1	12917293
AT1G66390.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G66390.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G66390.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G66390.1	PGSC0003DMT400033569	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036284	Potato	nucleus	34.13	33.49
Solyc10g086270.1.1	Tomato	nucleus	38.94	31.27
AT1G66380.1	Thale cress	nucleus	19.23	28.78
CDY72660	Canola	nucleus	17.79	28.24
VIT_02s0033g00450.t01	Wine grape	nucleus	20.67	27.22
Solyc10g086260.1.1	Tomato	nucleus	35.58	27.01
CDY72006	Canola	nucleus	22.12	26.29
VIT_14s0006g01280.t01	Wine grape	nucleus	28.37	24.28
KRH01212	Soybean	nucleus	20.19	22.22
VIT_14s0006g01290.t01	Wine grape	nucleus	25.96	22.22
CDY70737	Canola	nucleus	24.04	21.93
Bra004162.1-P	Field mustard	nucleus	25.96	21.86
CDX96151	Canola	nucleus	25.96	21.86
CDY55040	Canola	nucleus	25.96	21.69
VIT_02s0033g00430.t01	Wine grape	nucleus	23.08	21.43
VIT_02s0033g00400.t01	Wine grape	nucleus	23.08	21.43
AT1G56650.1	Thale cress	nucleus	25.48	21.37
CDY58386	Canola	nucleus, plastid	25.48	21.29
Bra039763.1-P	Field mustard	nucleus	25.48	21.29
AT1G66390.1	Thale cress	nucleus	25.48	21.29
AT1G66370.1	Thale cress	nucleus	25.0	21.14
CDY49630	Canola	nucleus	24.04	20.92
KRH01217	Soybean	nucleus	22.6	20.35
KRH40053	Soybean	nucleus	22.6	20.0
VIT_02s0033g00410.t01	Wine grape	nucleus	24.04	20.0
KRH40049	Soybean	nucleus	22.6	19.83
VIT_02s0033g00460.t01	Wine grape	mitochondrion	18.75	19.6
KRH40047	Soybean	nucleus	22.12	19.49
VIT_02s0033g00390.t01	Wine grape	nucleus	24.52	19.25
Bra001917.1-P	Field mustard	nucleus	22.6	18.88
VIT_14s0006g01340.t01	Wine grape	nucleus	21.63	18.83
KRG93566	Soybean	nucleus	21.63	17.79
CDY53214	Canola	nucleus	22.6	16.97
KRH21221	Soybean	nucleus	18.27	16.17
VIT_02s0033g00370.t01	Wine grape	nucleus	5.77	12.77
KRH40048	Soybean	cytosol	4.81	9.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400036281	EnsemblPlantsGene:PGSC0003DMG400013965	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF526	PFAM:PF00249	PFscan:PS51294	PGSC:PGSC0003DMG400013965	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI00029579B0	UniProt:M1B3G2	MapMan:35.2	:	:	:

Description

Transcription factor R2R3-MYB [Source:PGSC_GENE;Acc:PGSC0003DMG400013965]

Coordinates

chr10:+:51749197..51750359

Molecular Weight (calculated)

23410.6 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.639

Length

208 amino acids

Sequence
(BLAST)

001: MTSHVMIMST PMMCTFLGVI RKGSWTEEED ILLRKCIDKW SLIAGRLPGR TANDVKNYWN TNLLRKLNTS TKFAPQPQEG INTSTIAPQP QEGIKYGQAN
101: AIIRPQPQKF TSSMKINVSW CNNNSMVNNE EASKDNNDMQ WWANILENCN DIGEGEAERT LPSCKEINCN EIDKAPSLLH EGGNSMQQGQ GDGGWDEFAL
201: DDIWNLLN

Best Arabidopsis Sequence Match ( AT4G09460.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL

Arabidopsis Description

MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.