Factsheet for VIT_02s0033g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00450.t01	Wine grape	nucleus	49.06	82.28
VIT_02s0033g00370.t01	Wine grape	nucleus	26.04	73.4
CDY72660	Canola	nucleus	32.45	65.65
VIT_02s0033g00410.t01	Wine grape	nucleus	61.89	65.6
AT1G66380.1	Thale cress	nucleus	33.96	64.75
CDY72006	Canola	nucleus	35.47	53.71
VIT_02s0033g00400.t01	Wine grape	nucleus	45.28	53.57
VIT_02s0033g00430.t01	Wine grape	nucleus	44.53	52.68
VIT_02s0033g00460.t01	Wine grape	mitochondrion	37.74	50.25
KRH01212	Soybean	nucleus	35.09	49.21
VIT_14s0006g01290.t01	Wine grape	nucleus	44.53	48.56
VIT_14s0006g01280.t01	Wine grape	nucleus	44.15	48.15
VIT_14s0006g01340.t01	Wine grape	nucleus	40.75	45.19
KRH01217	Soybean	nucleus	38.49	44.16
KRH40047	Soybean	nucleus	39.25	44.07
CDY70737	Canola	nucleus	37.36	43.42
KRH40053	Soybean	nucleus	38.49	43.4
CDX96151	Canola	nucleus	40.38	43.32
CDY49630	Canola	nucleus	38.87	43.1
Bra004162.1-P	Field mustard	nucleus	40.0	42.91
AT1G66370.1	Thale cress	nucleus	39.62	42.68
AT1G66390.1	Thale cress	nucleus	40.0	42.57
Bra001917.1-P	Field mustard	nucleus	40.0	42.57
Solyc10g086270.1.1	Tomato	nucleus	41.51	42.47
KRH40049	Soybean	nucleus	37.74	42.19
AT1G56650.1	Thale cress	nucleus	38.49	41.13
Bra039763.1-P	Field mustard	nucleus	38.49	40.96
CDY55040	Canola	nucleus	38.49	40.96
CDY58386	Canola	nucleus, plastid	38.49	40.96
Solyc10g086250.1.1	Tomato	nucleus	41.51	40.0
Solyc10g086290.1.1	Tomato	nucleus	39.25	39.25
Solyc10g086260.1.1	Tomato	nucleus	39.62	38.32
KRG93566	Soybean	nucleus	35.85	37.55
VIT_01s0011g01200.t01	Wine grape	nucleus	29.06	37.02
CDY53214	Canola	nucleus	38.11	36.46
VIT_01s0011g01190.t01	Wine grape	nucleus	29.43	35.29
PGSC0003DMT400036281	Potato	extracellular	19.25	24.52
PGSC0003DMT400036284	Potato	nucleus	17.74	22.17
KRH40048	Soybean	cytosol	8.3	21.15
KRH21221	Soybean	nucleus	16.23	18.3

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100232838	wikigene:100232838	MapMan:15.5.2.1	EMBL:AB097924	EMBL:AB252699
ProteinID:ABL14065	ProteinID:ABL14065.1	ProteinID:ABL14066	ProteinID:ABL14066.1	ProteinID:BAD18978	ProteinID:BAD18978.1
ProteinID:BAF31138	ProteinID:BAF31138.1	ProteinID:CCB60327	ProteinID:CCB60327.1	EMBL:DQ886419	EMBL:DQ886420
EMBL:FN596505	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF952	UniProt:Q6L9M8	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGR:TC64356	UniParc:UPI00003679D8	ArrayExpress:VIT_02s0033g00390	EnsemblPlantsGene:VIT_02s0033g00390
EnsemblPlants:VIT_02s0033g00390.t01	EntrezGene:VVMYBA2	wikigene:VVMYBA2	unigene:Vvi.3323	RefSeq:XP_002265048	RefSeq:XP_002265048.1
RefSeq:XP_003631504	RefSeq:XP_003631504.1	SEG:seg	:	:	:

Description

Myb-relared transcription factor VvMYBA2 [Source:UniProtKB/TrEMBL;Acc:Q6L9M8]

Coordinates

chr2:-:14179728..14180733

Molecular Weight (calculated)

30330.3 Da

IEP (calculated)

10.362

GRAVY (calculated)

-0.729

Length

265 amino acids

Sequence
(BLAST)

001: MKSLGVRKGA WTQEEDVLLR KCIEKYGEGK WHLVPLRAGL NRCLKSCRLR WLNYLKPDIK RGEFALDEVD LMIRLHNLLG NRWSLIAGRL PGRTANDVKN
101: YWHGHHLKKK VQFQEEGRKK PQTHSKTKAI KPHPHKFSKA LPRFELKTTA VDTFDTQVST SSKPSSTSPQ PNDDIIWWES LLAEHAQMDQ ETDFSASGEM
201: LIASLWTEET ATQKKGTHSK TKAIKPHPHK FSKALPRFEL KTTAVDTFDT QVSTSSKLIH VTTTE

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.