Factsheet for VIT_02s0033g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00430.t01	Wine grape	nucleus	95.54	95.54
VIT_02s0033g00460.t01	Wine grape	mitochondrion	76.79	86.43
VIT_02s0033g00370.t01	Wine grape	nucleus	29.91	71.28
CDY72660	Canola	nucleus	37.95	64.89
VIT_02s0033g00450.t01	Wine grape	nucleus	45.54	64.56
AT1G66380.1	Thale cress	nucleus	39.29	63.31
VIT_02s0033g00410.t01	Wine grape	nucleus	60.27	54.0
CDY72006	Canola	nucleus	40.18	51.43
KRH01212	Soybean	nucleus	41.96	49.74
VIT_14s0006g01280.t01	Wine grape	nucleus	50.45	46.5
VIT_02s0033g00390.t01	Wine grape	nucleus	53.57	45.28
VIT_14s0006g01290.t01	Wine grape	nucleus	47.32	43.62
KRH01217	Soybean	nucleus	44.64	43.29
CDY70737	Canola	nucleus	43.3	42.54
KRH40047	Soybean	nucleus	44.2	41.95
KRH40049	Soybean	nucleus	44.2	41.77
KRH40053	Soybean	nucleus	42.86	40.85
CDY49630	Canola	nucleus	43.3	40.59
AT1G66370.1	Thale cress	nucleus	44.2	40.24
CDY55040	Canola	nucleus	44.64	40.16
Bra001917.1-P	Field mustard	nucleus	44.64	40.16
CDY58386	Canola	nucleus, plastid	44.64	40.16
CDX96151	Canola	nucleus	44.2	40.08
Bra039763.1-P	Field mustard	nucleus	44.2	39.76
AT1G66390.1	Thale cress	nucleus	44.2	39.76
Bra004162.1-P	Field mustard	nucleus	43.75	39.68
Solyc10g086270.1.1	Tomato	nucleus	44.64	38.61
Solyc10g086290.1.1	Tomato	nucleus	45.54	38.49
AT1G56650.1	Thale cress	nucleus	42.41	38.31
VIT_14s0006g01340.t01	Wine grape	nucleus	40.62	38.08
Solyc10g086260.1.1	Tomato	nucleus	45.09	36.86
KRG93566	Soybean	nucleus	41.52	36.76
Solyc10g086250.1.1	Tomato	nucleus	45.09	36.73
VIT_01s0011g01190.t01	Wine grape	nucleus	34.82	35.29
VIT_01s0011g01200.t01	Wine grape	nucleus	32.14	34.62
CDY53214	Canola	nucleus	42.41	34.3
PGSC0003DMT400036281	Potato	extracellular	21.43	23.08
PGSC0003DMT400036284	Potato	nucleus	19.64	20.75
KRH21221	Soybean	nucleus	20.09	19.15
KRH40048	Soybean	cytosol	6.7	14.42

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100261946	wikigene:100261946	MapMan:15.5.2.1	EMBL:AM453835	ProteinID:CAN67743
ProteinID:CAN67743.1	ProteinID:CCB60328	ProteinID:CCB60328.1	UniProt:F6I062	EMBL:FN596505	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100261946	wikigene:LOC100261946	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF952	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0001982D04	ArrayExpress:VIT_02s0033g00400	EnsemblPlantsGene:VIT_02s0033g00400	EnsemblPlants:VIT_02s0033g00400.t01	RefSeq:XP_002264650
RefSeq:XP_002264650.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:14190188..14191283

Molecular Weight (calculated)

25712.9 Da

IEP (calculated)

8.992

GRAVY (calculated)

-0.522

Length

224 amino acids

Sequence
(BLAST)

001: MESLGVRKGK WTREEDFLLR KCVEKYGEEK WHLVPLRAGL SRCRKSCRLR WFNYLKPNIK RGKFASDEVD LMIRLHKLLG NRWSLIAGRL PGRTANDVKN
101: YWHHHRFKKM VPIQEKGKDK AQTNSENTLI KPKPCKLFLG FTFKTTAVDA SETQGSTCSE LQPTLVQPNQ DILWWESLFA DHTIEDQELI ASLLADETAS
201: AVDTNGGGNF DFPFEMGLIG EAMI

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.