Factsheet for Bra001917.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027653.1-P
Bra027796.1-P
Bra037887.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	Bra027653.1-P	AT1G63650.1	12917293
AT1G56650.1	Bra027796.1-P	AT1G63650.1	12917293
AT1G56650.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G56650.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G56650.1	Bra037887.1-P	AT4G09820.1	15361138
AT1G56650.1	Bra037887.1-P	AT4G09820.1	18532977
AT1G66370.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G66370.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G66370.1	Bra037887.1-P	AT4G09820.1	15361138
AT1G66380.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G66380.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G66380.1	Bra037887.1-P	AT4G09820.1	15361138
AT1G66390.1	Bra027653.1-P	AT1G63650.1	12917293
AT1G66390.1	Bra027796.1-P	AT1G63650.1	12917293
AT1G66390.1	Bra027653.1-P	AT1G63650.1	15361138
AT1G66390.1	Bra027796.1-P	AT1G63650.1	15361138
AT1G66390.1	Bra037887.1-P	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72660	Canola	nucleus	52.21	99.24
AT1G66380.1	Thale cress	nucleus	48.59	87.05
Bra039763.1-P	Field mustard	nucleus	80.72	80.72
CDY53214	Canola	nucleus	89.16	80.14
AT1G66390.1	Thale cress	nucleus	77.91	77.91
Bra004162.1-P	Field mustard	nucleus	76.71	77.33
AT1G56650.1	Thale cress	nucleus	75.9	76.21
AT1G66370.1	Thale cress	nucleus	65.86	66.67
VIT_02s0033g00370.t01	Wine grape	nucleus	24.1	63.83
VIT_02s0033g00450.t01	Wine grape	nucleus	37.75	59.49
KRH01212	Soybean	nucleus	38.15	50.26
VIT_14s0006g01280.t01	Wine grape	nucleus	45.38	46.5
VIT_02s0033g00400.t01	Wine grape	nucleus	40.16	44.64
VIT_02s0033g00430.t01	Wine grape	nucleus	40.16	44.64
VIT_14s0006g01290.t01	Wine grape	nucleus	42.57	43.62
KRH40053	Soybean	nucleus	40.16	42.55
KRH40047	Soybean	nucleus	39.76	41.95
VIT_02s0033g00460.t01	Wine grape	mitochondrion	32.93	41.21
VIT_02s0033g00410.t01	Wine grape	nucleus	41.37	41.2
KRH40049	Soybean	nucleus	38.96	40.93
KRH01217	Soybean	nucleus	37.75	40.69
VIT_02s0033g00390.t01	Wine grape	nucleus	42.57	40.0
Solyc10g086270.1.1	Tomato	nucleus	41.37	39.77
Solyc10g086250.1.1	Tomato	nucleus	43.78	39.64
Solyc10g086290.1.1	Tomato	nucleus	41.77	39.25
Solyc10g086260.1.1	Tomato	nucleus	42.97	39.05
VIT_14s0006g01340.t01	Wine grape	nucleus	36.95	38.49
KRG93566	Soybean	nucleus	37.75	37.15
PGSC0003DMT400036284	Potato	nucleus	19.68	23.11
PGSC0003DMT400036281	Potato	extracellular	18.88	22.6
KRH21221	Soybean	nucleus	20.08	21.28
KRH40048	Soybean	cytosol	6.43	15.38

Protein Annotations

EnsemblPlants:Bra001917.1	EnsemblPlants:Bra001917.1-P	EnsemblPlantsGene:Bra001917	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF526	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00025407A7	UniProt:M4CCI7	MapMan:15.5.2.1	:	:

Description

AT1G66390 (E=5e-110) ATMYB90, PAP2, MYB90 | MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor

Coordinates

chrA03:-:19337364..19338849

Molecular Weight (calculated)

28391.1 Da

IEP (calculated)

9.123

GRAVY (calculated)

-0.669

Length

249 amino acids

Sequence
(BLAST)

001: MEDSSKGLTK GAWTAEEDSL LRRCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPN IKRGKLSSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDI
101: KNYWNTHLSK KHEPCCKTKM KKRNVTFSST TPAQKIDVFK PRPRLFTVNN GCSHLHGLPE VDVVPPCLGL NNINNVCENS MTCNKAGEKY ELYSNLMDGE
201: NMWWESLLEE SKQPDGLVPK GTATKKGATF AFDVEQLWNM LDGETVELD

Best Arabidopsis Sequence Match ( AT1G56650.1 )
(BLAST)

001: MEGSSKGLRK GAWTTEEDSL LRQCINKYGE GKWHQVPVRA GLNRCRKSCR LRWLNYLKPS IKRGKLSSDE VDLLLRLHRL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD

Arabidopsis Description

MYB75Transcription factor MYB75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.