Factsheet for PGSC0003DMT400036284

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028052
PGSC0003DMT400028054
PGSC0003DMT400032140
PGSC0003DMT400033569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	PGSC0003DMT400032140	AT1G63650.1	12917293
AT1G56650.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G56650.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G56650.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G56650.1	PGSC0003DMT400033569	AT4G09820.1	15361138
AT1G56650.1	PGSC0003DMT400028052	AT4G09820.1	18532977
AT1G56650.1	PGSC0003DMT400028054	AT4G09820.1	18532977
AT1G56650.1	PGSC0003DMT400033569	AT4G09820.1	18532977
AT1G66370.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G66370.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G66370.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G66370.1	PGSC0003DMT400033569	AT4G09820.1	15361138
AT1G66380.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G66380.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G66380.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G66380.1	PGSC0003DMT400033569	AT4G09820.1	15361138
AT1G66390.1	PGSC0003DMT400032140	AT1G63650.1	12917293
AT1G66390.1	PGSC0003DMT400032140	AT1G63650.1	15361138
AT1G66390.1	PGSC0003DMT400028052	AT4G09820.1	15361138
AT1G66390.1	PGSC0003DMT400028054	AT4G09820.1	15361138
AT1G66390.1	PGSC0003DMT400033569	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086250.1.1	Tomato	nucleus	75.47	58.18
PGSC0003DMT400036281	Potato	extracellular	33.49	34.13
KRH01212	Soybean	nucleus	21.7	24.34
VIT_14s0006g01280.t01	Wine grape	nucleus	27.83	24.28
AT1G66380.1	Thale cress	nucleus	15.57	23.74
CDY72006	Canola	nucleus	19.34	23.43
VIT_14s0006g01290.t01	Wine grape	nucleus	25.47	22.22
AT1G56650.1	Thale cress	nucleus	25.94	22.18
CDY72660	Canola	nucleus	13.68	22.14
Bra039763.1-P	Field mustard	nucleus	25.94	22.09
CDY55040	Canola	nucleus	25.94	22.09
CDY58386	Canola	nucleus, plastid	25.94	22.09
KRH40049	Soybean	nucleus	24.53	21.94
KRH40047	Soybean	nucleus	23.58	21.19
VIT_02s0033g00450.t01	Wine grape	nucleus	15.57	20.89
KRH40053	Soybean	nucleus	23.11	20.85
AT1G66370.1	Thale cress	nucleus	24.06	20.73
CDX96151	Canola	nucleus	24.06	20.65
Bra004162.1-P	Field mustard	nucleus	24.06	20.65
CDY70737	Canola	nucleus	22.17	20.61
AT1G66390.1	Thale cress	nucleus	24.06	20.48
VIT_02s0033g00460.t01	Wine grape	mitochondrion	18.87	20.1
Bra001917.1-P	Field mustard	nucleus	23.11	19.68
CDY49630	Canola	nucleus	22.17	19.67
VIT_02s0033g00400.t01	Wine grape	nucleus	20.75	19.64
VIT_02s0033g00410.t01	Wine grape	nucleus	23.11	19.6
VIT_02s0033g00430.t01	Wine grape	nucleus	20.28	19.2
VIT_14s0006g01340.t01	Wine grape	nucleus	21.23	18.83
KRG93566	Soybean	nucleus	21.7	18.18
KRH01217	Soybean	nucleus	19.34	17.75
VIT_02s0033g00390.t01	Wine grape	nucleus	22.17	17.74
CDY53214	Canola	nucleus	22.64	17.33
KRH40048	Soybean	cytosol	8.02	16.35
KRH21221	Soybean	nucleus	16.98	15.32
VIT_02s0033g00370.t01	Wine grape	nucleus	2.36	5.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400036284	EnsemblPlantsGene:PGSC0003DMG400013966	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF526	PFAM:PF00249	PFscan:PS51294	PGSC:PGSC0003DMG400013966	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000295B193	UniProt:M1B3G4	MapMan:35.2	:	:

Description

MYB transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013966]

Coordinates

chr10:+:51725511..51726374

Molecular Weight (calculated)

24509.0 Da

IEP (calculated)

8.343

GRAVY (calculated)

-0.901

Length

212 amino acids

Sequence
(BLAST)

001: MCRIKSMSKE LQTKVAKLSK ATYQERWSLI AGRLPGRTAN DVKNYWNTHF QKKLNIIAPP PPPRPRPNHH LQIKHKSITV NKNEIIRPQP RNFSNVKKNN
101: SHWCNNKSMI TNTLDKDDKR CKEIVVNISE KPTGENTSSI DDGVQWWTNL LENCNEIEEE VAVTNFEKTP TMLLHEEISP PLINGEGNSM QQGQSHDWDD
201: FSTDIDLWNL LN

Best Arabidopsis Sequence Match ( AT1G66390.1 )
(BLAST)

001: MEGSSKGLRK GAWTAEEDSL LRLCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGRLSNDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD

Arabidopsis Description

MYB90Transcription factor MYB90 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.