Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93566 | Soybean | nucleus | 60.85 | 56.52 |
| KRH01212 | Soybean | nucleus | 25.96 | 32.28 |
| CDY72660 | Canola | nucleus | 16.6 | 29.77 |
| KRH01217 | Soybean | nucleus | 27.23 | 27.71 |
| KRH40047 | Soybean | nucleus | 27.66 | 27.54 |
| AT1G66380.1 | Thale cress | nucleus | 16.17 | 27.34 |
| KRH40049 | Soybean | nucleus | 26.38 | 26.16 |
| KRH40053 | Soybean | nucleus | 25.53 | 25.53 |
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 16.6 | 24.68 |
| CDY72006 | Canola | nucleus | 18.3 | 24.57 |
| CDY70737 | Canola | nucleus | 20.85 | 21.49 |
| CDY49630 | Canola | nucleus | 21.7 | 21.34 |
| KRH49229 | Soybean | nucleus | 20.43 | 21.24 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 17.45 | 20.6 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 21.28 | 20.58 |
| AT1G66390.1 | Thale cress | nucleus | 21.7 | 20.48 |
| CDX96151 | Canola | nucleus | 21.28 | 20.24 |
| Bra004162.1-P | Field mustard | nucleus | 21.28 | 20.24 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 19.15 | 20.09 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 19.15 | 20.09 |
| CDY58386 | Canola | nucleus, plastid | 21.28 | 20.08 |
| CDY55040 | Canola | nucleus | 21.28 | 20.08 |
| Bra001917.1-P | Field mustard | nucleus | 21.28 | 20.08 |
| Bra039763.1-P | Field mustard | nucleus | 20.85 | 19.68 |
| KRH00082 | Soybean | nucleus | 18.72 | 19.47 |
| AT1G56650.1 | Thale cress | nucleus | 20.43 | 19.35 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 20.0 | 19.34 |
| KRH40048 | Soybean | cytosol | 8.51 | 19.23 |
| Solyc10g086270.1.1 | Tomato | nucleus | 20.85 | 18.92 |
| AT1G66370.1 | Thale cress | nucleus | 19.15 | 18.29 |
| PGSC0003DMT400036281 | Potato | extracellular | 16.17 | 18.27 |
| Solyc10g086250.1.1 | Tomato | nucleus | 21.28 | 18.18 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 18.3 | 17.99 |
| Solyc10g086290.1.1 | Tomato | nucleus | 19.57 | 17.36 |
| Solyc10g086260.1.1 | Tomato | nucleus | 20.0 | 17.15 |
| PGSC0003DMT400036284 | Potato | nucleus | 15.32 | 16.98 |
| CDY53214 | Canola | nucleus | 20.0 | 16.97 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 17.87 | 16.8 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 18.3 | 16.23 |
| VIT_02s0033g00370.t01 | Wine grape | nucleus | 5.96 | 14.89 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | EMBL:ACUP02008350 | EnsemblPlantsGene:GLYMA_13G226800 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K7M188 | EnsemblPlants:KRH21221 | ProteinID:KRH21221 | ProteinID:KRH21221.1 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF692 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | UniParc:UPI00029481DA | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:33942335..33945751
Molecular Weight (calculated)
27259.0 Da
IEP (calculated)
10.220
GRAVY (calculated)
-0.530
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKTYPWTLK IIDKERIRII NREHETSSGI VLAYAPPTLF YGISKIWCDY YLLYIGLLYY NMIALDRISA KNINQRELKR SKFNILQESK LKKRWSLIVG
101: RLPGRTPNDV KNYWNTYIRR KVSSSHKVVI NEKQEKTTVK PHVVIKPKAR TFSRPSPSGL RGSNVLREEG GESGAKHCST HHQACAASSE CINNWSTDQW
201: WKTMMHDKGD NLDNNQCLLA YQDEVGKLKF IILLS
101: RLPGRTPNDV KNYWNTYIRR KVSSSHKVVI NEKQEKTTVK PHVVIKPKAR TFSRPSPSGL RGSNVLREEG GESGAKHCST HHQACAASSE CINNWSTDQW
201: WKTMMHDKGD NLDNNQCLLA YQDEVGKLKF IILLS
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Arabidopsis Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.