CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93566
KRG95511
KRG96561
KRH01212
KRH01217
KRH16413
KRH17997
KRH21221
KRH24301
KRH29280
KRH31760
KRH32008
KRH40047
KRH40048
KRH40049
KRH40053
KRH51400
KRH53635
KRH60702
KRH64293
KRH67189
KRH68299
KRH69178
KRH71432

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	KRG93566	AT1G56650.1	15361138
AT4G09820.1	KRH01212	AT1G56650.1	15361138
AT4G09820.1	KRH01217	AT1G56650.1	15361138
AT4G09820.1	KRH21221	AT1G56650.1	15361138
AT4G09820.1	KRH40047	AT1G56650.1	15361138
AT4G09820.1	KRH40048	AT1G56650.1	15361138
AT4G09820.1	KRH40049	AT1G56650.1	15361138
AT4G09820.1	KRH40053	AT1G56650.1	15361138
AT4G09820.1	KRG93566	AT1G56650.1	18532977
AT4G09820.1	KRH01212	AT1G56650.1	18532977
AT4G09820.1	KRH01217	AT1G56650.1	18532977
AT4G09820.1	KRH21221	AT1G56650.1	18532977
AT4G09820.1	KRH40047	AT1G56650.1	18532977
AT4G09820.1	KRH40048	AT1G56650.1	18532977
AT4G09820.1	KRH40049	AT1G56650.1	18532977
AT4G09820.1	KRH40053	AT1G56650.1	18532977
AT4G09820.1	KRG93566	AT1G66370.1	15361138
AT4G09820.1	KRH01212	AT1G66370.1	15361138
AT4G09820.1	KRH01217	AT1G66370.1	15361138
AT4G09820.1	KRH21221	AT1G66370.1	15361138
AT4G09820.1	KRH40047	AT1G66370.1	15361138
AT4G09820.1	KRH40048	AT1G66370.1	15361138
AT4G09820.1	KRH40049	AT1G66370.1	15361138
AT4G09820.1	KRH40053	AT1G66370.1	15361138
AT4G09820.1	KRG93566	AT1G66380.1	15361138
AT4G09820.1	KRH01212	AT1G66380.1	15361138
AT4G09820.1	KRH01217	AT1G66380.1	15361138
AT4G09820.1	KRH21221	AT1G66380.1	15361138
AT4G09820.1	KRH40047	AT1G66380.1	15361138
AT4G09820.1	KRH40048	AT1G66380.1	15361138
AT4G09820.1	KRH40049	AT1G66380.1	15361138
AT4G09820.1	KRH40053	AT1G66380.1	15361138
AT4G09820.1	KRG93566	AT1G66390.1	15361138
AT4G09820.1	KRH01212	AT1G66390.1	15361138
AT4G09820.1	KRH01217	AT1G66390.1	15361138
AT4G09820.1	KRH21221	AT1G66390.1	15361138
AT4G09820.1	KRH40047	AT1G66390.1	15361138
AT4G09820.1	KRH40048	AT1G66390.1	15361138
AT4G09820.1	KRH40049	AT1G66390.1	15361138
AT4G09820.1	KRH40053	AT1G66390.1	15361138
AT4G09820.1	KRG96561	AT2G47190.1	18532977
AT4G09820.1	KRH31760	AT2G47190.1	18532977
AT4G09820.1	KRH68299	AT2G47190.1	18532977
AT4G09820.1	KRH69178	AT2G47190.1	18532977
AT4G09820.1	KRH16413	AT3G13540.1	15361138
AT4G09820.1	KRH17997	AT3G13540.1	15361138
AT4G09820.1	KRG95511	AT4G09820.1	18532977
AT4G09820.1	KRH32008	AT4G09820.1	18532977
AT4G09820.1	KRH67189	AT4G09820.1	18532977
AT4G09820.1	KRH71432	AT4G09820.1	18532977
AT4G09820.1	KRH24301	AT4G38620.1	15361138
AT4G09820.1	KRH29280	AT4G38620.1	15361138
AT4G09820.1	KRH51400	AT4G38620.1	15361138
AT4G09820.1	KRH60702	AT4G38620.1	15361138
AT4G09820.1	KRH53635	AT5G24520.1	15255866
AT4G09820.1	KRH64293	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32008	Soybean	extracellular, plastid	91.58	90.06
VIT_07s0104g00090.t01	Wine grape	nucleus	70.44	66.09
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	52.99	60.49
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	54.21	60.2
GSMUA_Achr3P17620_001	Banana	nucleus	49.92	57.8
AT4G09820.1	Thale cress	nucleus	45.02	56.76
PGSC0003DMT400033569	Potato	nucleus	49.62	54.92
CDX86891	Canola	nucleus	43.49	54.51
Solyc09g065100.1.1	Tomato	nucleus	56.51	54.26
CDX99505	Canola	nucleus	43.03	53.93
Bra037887.1-P	Field mustard	nucleus	40.58	53.32
GSMUA_Achr6P21490_001	Banana	nucleus	51.61	51.77
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	41.19	42.97
TraesCS1B01G112900.1	Wheat	nucleus	39.51	40.89
TraesCS1B01G113100.4	Wheat	nucleus	41.65	39.53
OQU88697	Sorghum	nucleus	40.89	39.44
Zm00001d019170_P001	Maize	nucleus	40.28	39.02
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	28.94	37.13
TraesCS1D01G094200.1	Wheat	nucleus	34.0	35.18
KRH41187	Soybean	nucleus	31.24	32.38
KRH59908	Soybean	nucleus	31.24	32.33
KRH48144	Soybean	nucleus	28.33	28.46
KRH65046	Soybean	nucleus	27.57	27.82
PGSC0003DMT400028054	Potato	cytosol	7.81	25.89
KRH42021	Soybean	nucleus	7.66	25.64
PGSC0003DMT400028052	Potato	nucleus	7.81	25.12
KRH47834	Soybean	nucleus	17.46	24.57
KRH06400	Soybean	nucleus	17.46	24.46
KRH05127	Soybean	nucleus, plastid	10.26	22.87
KRH47401	Soybean	nucleus	6.89	22.17
KRH68922	Soybean	nucleus	18.38	21.82
KRH28295	Soybean	nucleus	10.41	21.73
KRH32144	Soybean	nucleus	16.69	21.63
KRH23623	Soybean	nucleus	7.04	21.1
KRH19522	Soybean	nucleus	16.23	20.95
KRH28296	Soybean	nucleus	11.18	20.92
KRH00980	Soybean	nucleus	6.43	20.69
KRH77195	Soybean	nucleus	11.33	20.11
KRH74418	Soybean	nucleus	19.6	19.94
KRH09683	Soybean	nucleus	7.81	19.47
KRG97199	Soybean	nucleus	18.38	19.39
KRH77192	Soybean	nucleus	10.11	19.35
KRH06456	Soybean	nucleus	18.22	19.26
KRH44509	Soybean	nucleus	6.28	19.25
KRH49880	Soybean	nucleus	9.49	18.84
KRH04348	Soybean	nucleus	10.72	18.77
KRH75613	Soybean	nucleus	18.22	18.68
KRH44511	Soybean	nucleus	9.34	18.6
KRH66425	Soybean	nucleus	8.88	18.59
KRH47899	Soybean	nucleus	17.76	18.53
KRH45440	Soybean	nucleus	18.38	18.35
KRH23624	Soybean	nucleus	7.96	18.31
KRH09685	Soybean	cytosol	8.27	18.24
KRH23621	Soybean	nucleus	8.12	18.21
KRH40246	Soybean	nucleus, vacuole	7.5	18.15
KRH04346	Soybean	nucleus	10.26	18.06
KRH48860	Soybean	nucleus	8.73	18.04
KRH47399	Soybean	nucleus	9.34	17.89
KRH39540	Soybean	nucleus	19.91	17.78
KRH47400	Soybean	nucleus	7.2	17.47
KRH58186	Soybean	nucleus	9.65	17.45
KRH58189	Soybean	nucleus	9.8	16.75
KRH40248	Soybean	cytosol	3.68	16.67
KRH44510	Soybean	nucleus	6.89	16.36
KRH04347	Soybean	nucleus	8.42	16.13
KRH58187	Soybean	endoplasmic reticulum	8.27	16.07
KRH00981	Soybean	nucleus	7.96	16.0
KRH10664	Soybean	nucleus	9.04	15.99
KRH48858	Soybean	nucleus	7.81	15.84
KRH77193	Soybean	nucleus	7.81	15.55
KRH21680	Soybean	nucleus, vacuole	8.73	15.16
KRH44512	Soybean	nucleus	8.58	14.93
KRH66407	Soybean	nucleus	8.88	14.87
KRH48847	Soybean	nucleus	8.58	14.7
KRH47398	Soybean	nucleus	7.96	14.05
KRH00979	Soybean	nucleus	6.43	13.82

Protein Annotations

EntrezGene:100786815	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02000899	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G147800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K7K8E7	EnsemblPlants:KRH71432	ProteinID:KRH71432	ProteinID:KRH71432.1	InterPro:MYC/MYB_N
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002952606	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:15251037..15260683

Molecular Weight (calculated)

73032.3 Da

IEP (calculated)

5.350

GRAVY (calculated)

-0.463

Length

653 amino acids

Sequence
(BLAST)

001: MTAPLDTGLQ SMLQAAVQSV HWTYSLFWQL CPQQVILVWG DGYYNGAIKT RKTVQPMEVS AEEASLQRSQ QLRELYESLS VGETNPPTRR PCAALSPEDL
101: TESEWFYLMC VSFSFPPGVG LPGKAYARRQ HLWLTGANEV DSKTFSRAIL AKSARIQTVV CIPLLDGVVE FGTTDKVQED LSFIQHVKTF FIDHLIPLRP
201: KPALSEHSTS NPTSSDHIPT VMYTMVDPPA AKCNLNDDMD EDIEEEEEEE EEDEVESGSE DETGDGIACQ TLRPSTVAEP SELMQLEMPE DIRLGSPNDG
301: SNNLDSDFHL LAVSQGGNEA RQAESTRRWS SSQEPMQVQL PTSALHPLED LTQEDTHYSQ TVSNILQNQT TRWLASPSSI GYNTYSTHSA FAKWSSRASH
401: HFHPAADGTS QWLLKYILFT VPHLHAKNPG ESSPHTAADT KLRGKGTPQD ELSANHVLAE RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL
501: RRKIQELEAR NRLTEERSKL PEVAVQRTSS SSSKEQQRSG VTMMEKRKVR IVEGVAAKAK AVEVEATTSV QVSIIESDAL LEIECRHREG LLLDVMQMLR
601: EVRIEVIGVQ SSLNNGVFVA ELRAKVKEHA NGKKVSIVEV KRALNQIIPH AVD

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.