Factsheet for TraesCS1A01G102400.2

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus

Predictor Summary:

mitochondrion 3
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G102400.2
TraesCS1B01G112900.1
TraesCS1B01G113100.4
TraesCS1D01G094200.1
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS5A01G329900.1
TraesCS5B01G330100.1
TraesCS5D01G335700.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCS7A01G272100.1
TraesCS7B01G169900.1
TraesCS7D01G272400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS1A01G102400.2	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G112900.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G113100.4	AT4G09820.1	18532977
AT4G09820.1	TraesCS1D01G094200.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS5A01G329900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5B01G330100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5D01G335700.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7A01G272100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7B01G169900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7D01G272400.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS6A01G259400.1	AT5G24520.1	15255866
AT4G09820.1	TraesCS6B01G286700.1	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G112900.1	Wheat	nucleus	89.14	88.43
TraesCS1B01G113100.4	Wheat	nucleus	91.53	83.28
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	64.06	78.78
TraesCS1D01G094200.1	Wheat	nucleus	73.64	73.06
OQU88697	Sorghum	nucleus	54.31	50.22
GSMUA_Achr3P17620_001	Banana	nucleus	42.49	47.16
Zm00001d019170_P001	Maize	nucleus	50.48	46.88
GSMUA_Achr6P21490_001	Banana	nucleus	45.69	43.93
AT4G09820.1	Thale cress	nucleus	35.78	43.24
CDX86891	Canola	nucleus	34.98	42.03
CDX99505	Canola	nucleus	34.98	42.03
KRH71432	Soybean	nucleus	42.97	41.19
KRH32008	Soybean	extracellular, plastid	43.61	41.11
VIT_07s0104g00090.t01	Wine grape	nucleus	45.69	41.09
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	37.38	40.91
Bra037887.1-P	Field mustard	nucleus	32.11	40.44
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	36.74	39.12
PGSC0003DMT400033569	Potato	nucleus	34.66	36.78
Solyc09g065100.1.1	Tomato	nucleus	39.94	36.76
TraesCS2A01G409600.2	Wheat	nucleus, plastid	27.16	30.47
TraesCS2A01G409400.1	Wheat	nucleus	25.72	28.35
TraesCS5A01G489500.1	Wheat	nucleus	25.4	27.89
TraesCS5A01G558500.1	Wheat	nucleus	25.56	27.35
PGSC0003DMT400028054	Potato	cytosol	7.67	24.37
PGSC0003DMT400028052	Potato	nucleus	7.83	24.14
TraesCS1A01G369200.1	Wheat	nucleus	7.19	22.73
TraesCS5A01G505100.1	Wheat	nucleus	10.38	21.74
TraesCS3A01G252900.1	Wheat	nucleus	15.65	21.35
TraesCS5A01G555200.1	Wheat	nucleus	10.38	20.9
TraesCS2A01G448500.1	Wheat	nucleus	8.47	20.7
TraesCS4A01G059100.1	Wheat	nucleus	10.54	19.88
TraesCS5A01G306200.1	Wheat	nucleus	8.63	19.35
TraesCS5A01G306700.1	Wheat	peroxisome	8.47	19.34
TraesCS5A01G306500.1	Wheat	nucleus	8.47	18.86
TraesCS5A01G306400.1	Wheat	nucleus	6.71	18.83
TraesCS5A01G306600.1	Wheat	nucleus	8.15	18.55
TraesCS4A01G354100.1	Wheat	nucleus	9.58	18.46
TraesCS1A01G193200.1	Wheat	nucleus	19.49	17.6
TraesCS4A01G028900.1	Wheat	nucleus	16.77	17.59
TraesCS5A01G555300.1	Wheat	nucleus	6.71	17.14
TraesCS4A01G292700.1	Wheat	nucleus	9.58	16.71
TraesCS4A01G292800.1	Wheat	nucleus	9.74	16.58
TraesCS3A01G158600.1	Wheat	nucleus	16.29	16.56
TraesCS3A01G019000.1	Wheat	nucleus	8.31	16.3
TraesCS4A01G408700.1	Wheat	nucleus	6.55	15.19
TraesCS3A01G019100.1	Wheat	nucleus	7.67	15.09
TraesCS5A01G014800.1	Wheat	nucleus	9.11	14.5
TraesCS7A01G558700.1	Wheat	nucleus	7.35	14.33
TraesCS4A01G257900.2	Wheat	nucleus	8.63	14.32
TraesCS4A01G408800.1	Wheat	nucleus	8.47	13.8

Protein Annotations

MapMan:15.5.32	Gene3D:3.30.450.40	Gene3D:4.10.280.10	InterPro:GAF-like_dom_sf	GO:GO:0000003	GO:GO:0000976
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009791	GO:GO:0009867	GO:GO:0009987	GO:GO:0010026	GO:GO:0010214	GO:GO:0019748
GO:GO:0030154	GO:GO:0031542	GO:GO:0046983	GO:GO:0048316	GO:GO:2000029	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR029016	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS1A01G102400
EnsemblPlants:TraesCS1A01G102400.2	InterPro:bHLH_dom	TIGR:cd00083	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:98584808..98591571

Molecular Weight (calculated)

68480.5 Da

IEP (calculated)

5.900

GRAVY (calculated)

-0.419

Length

626 amino acids

Sequence
(BLAST)

001: MASSGEVQRS LQAVAQGLRW TYALLWQLCP DQGALVWAEG HYNGAIKTRK TVQPAVAQAQ VPAPAAEAAD QARSRQLREL FDSLAREAAA GGGTGFRDVH
101: GCAQEARRPS AALAPEDLTE TEWFYLMSAS YSFPPGVGLP GRAFARGGHV WLSRANEVDS KAFSRAILAR SAGIKTVVCI PIVDGVLEIG TTEKVEEDMG
201: LVQYAMAIFM DQQETHMISS ICHSNQTSHI DQQSFQTQRK TPTGQPKPEP NKFNPEYEDD EMEYDDDEID AECASGSASH DDHTTHNAGS SELMQVETSE
301: RVRDGCSSNF GDEIQMLMVC QNSTDDHSNL HGQNEAWHFL YEELCSGYPQ SSAAGENQAM AENAHYAQTL SLILHRNNAL RQGGGLNTGS YLAVSLQSSF
401: SRWDAGIHGR TVAQGTTRQK MLKSVLLFFS AACNKPPGDP RCDDAGARRE VDFGASHVMQ ERKRREKLNE RFIVLRSLVP FVTKMDKASI LGDTIEYVKQ
501: LTKRIQDLES STVRGPAMSK EKRALPTGME GASSSSGSTP VATDVQVSII ESDALLELRC PDTHGLLVTI MQTLQEQLRL EVTSVQASSD HGVLLAELRA
601: KVREVHGRRS SISQVKRAIH LIISSG

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.