Factsheet for TraesCS1B01G113100.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
endoplasmic reticulum 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G102400.2
TraesCS1B01G112900.1
TraesCS1B01G113100.4
TraesCS1D01G094200.1
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS5A01G329900.1
TraesCS5B01G330100.1
TraesCS5D01G335700.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCS7A01G272100.1
TraesCS7B01G169900.1
TraesCS7D01G272400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT4G09820.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT4G09820.1	TraesCS1A01G102400.2	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G112900.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS1B01G113100.4	AT4G09820.1	18532977
AT4G09820.1	TraesCS1D01G094200.1	AT4G09820.1	18532977
AT4G09820.1	TraesCS5A01G329900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5B01G330100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS5D01G335700.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7A01G272100.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7B01G169900.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS7D01G272400.1	AT4G38620.1	15361138
AT4G09820.1	TraesCS6A01G259400.1	AT5G24520.1	15255866
AT4G09820.1	TraesCS6B01G286700.1	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G112900.1	Wheat	nucleus	84.16	91.76
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	83.28	91.53
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	61.48	83.1
TraesCS1D01G094200.1	Wheat	nucleus	68.31	74.48
OQU88697	Sorghum	nucleus	49.56	50.37
GSMUA_Achr3P17620_001	Banana	nucleus	38.81	47.34
Zm00001d019170_P001	Maize	nucleus	46.37	47.33
AT4G09820.1	Thale cress	nucleus	32.85	43.63
GSMUA_Achr6P21490_001	Banana	nucleus	41.28	43.63
CDX86891	Canola	nucleus	32.41	42.8
CDX99505	Canola	nucleus	32.41	42.8
KRH71432	Soybean	nucleus	39.53	41.65
VIT_07s0104g00090.t01	Wine grape	nucleus	41.86	41.38
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	34.3	41.26
Bra037887.1-P	Field mustard	nucleus	29.8	41.25
KRH32008	Soybean	extracellular, plastid	39.39	40.81
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	34.16	39.97
PGSC0003DMT400033569	Potato	nucleus	31.69	36.95
Solyc09g065100.1.1	Tomato	nucleus	36.34	36.76
TraesCS2B01G428000.1	Wheat	nucleus	25.44	30.54
TraesCS4B01G397400.1	Wheat	nucleus	24.27	29.61
TraesCS4B01G397800.1	Wheat	nucleus	19.91	26.86
PGSC0003DMT400028054	Potato	cytosol	6.98	24.37
PGSC0003DMT400028052	Potato	nucleus	6.98	23.65
TraesCS3B01G288700.1	Wheat	nucleus	14.83	23.02
TraesCS4B01G397300.1	Wheat	nucleus	13.08	22.11
TraesCS4B01G234700.1	Wheat	nucleus	9.3	21.26
TraesCS2B01G469200.1	Wheat	nucleus	7.56	21.14
TraesCS2B01G469300.1	Wheat	nucleus	7.85	21.09
TraesCS3B01G284800.1	Wheat	nucleus	14.39	20.84
TraesCS4B01G345800.1	Wheat	nucleus	9.3	20.58
TraesCS5B01G307100.1	Wheat	nucleus	8.14	20.51
TraesCS5B01G306800.1	Wheat	nucleus	8.28	20.36
TraesCS5B01G307000.1	Wheat	nucleus	8.14	20.07
TraesCS5B01G306600.1	Wheat	nucleus	7.85	19.78
TraesCS1B01G387900.1	Wheat	nucleus	6.83	19.67
TraesCS4B01G391500.1	Wheat	nucleus	9.16	19.63
TraesCS4B01G335200.1	Wheat	nucleus	6.69	18.7
TraesCS5B01G518400.1	Wheat	nucleus	8.58	18.15
TraesCS1B01G208000.1	Wheat	nucleus	18.17	18.04
TraesCS4B01G276900.1	Wheat	nucleus	15.55	17.89
TraesCS5B01G518500.1	Wheat	nucleus	8.43	17.85
TraesCS5B01G518800.1	Wheat	nucleus	7.85	17.14
TraesCS3B01G185400.1	Wheat	nucleus	15.41	16.96
TraesCS4B01G021500.1	Wheat	nucleus	8.58	16.53
TraesCS4B01G021100.1	Wheat	nucleus	8.58	16.25
TraesCS4B01G021200.1	Wheat	nucleus	8.58	15.99
TraesCS4B01G020900.1	Wheat	nucleus	8.58	15.95
TraesCS7B01G483600.1	Wheat	nucleus	7.27	15.58
TraesCS4B01G020700.1	Wheat	nucleus	8.14	15.34
TraesCS4B01G308100.1	Wheat	nucleus	7.56	14.99
TraesCS4B01G056600.2	Wheat	nucleus	8.14	14.97
TraesCS5B01G013000.2	Wheat	nucleus	8.14	14.81
TraesCS4B01G308200.1	Wheat	nucleus	7.41	14.17
TraesCS4B01G308300.1	Wheat	nucleus	7.27	13.74
TraesCS3B01G029800.1	Wheat	nucleus	6.25	13.11

Protein Annotations

MapMan:15.5.32	Gene3D:3.30.450.40	Gene3D:4.10.280.10	InterPro:GAF-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR029016	InterPro:IPR036638
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS1B01G113100	EnsemblPlants:TraesCS1B01G113100.4	InterPro:bHLH_dom	TIGR:cd00083
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:131775632..131785030

Molecular Weight (calculated)

75625.2 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.374

Length

688 amino acids

Sequence
(BLAST)

001: MASSGEVHRS LQAVAQGLRW TYAILWQLCP DQGYSNNNTS SIVAMFISHL HNCFICPCST QVFFEFLLLV TGINGMHGSA LVWTEGHYNG AIKTRKTVQP
101: AVAQAQAPAA EAADQARSRQ LRELFDSLAR EAAAGGGTGF RDVHGCAQEA RRPSAALAPE DLTETEWFYL MSASYSFPPG VGLPGRAFAR GGHVWLSRAN
201: EVDSKAFSRA ILARSAGIKT VVCIPIVDGV LEIGTTEKVE EEMGLVQYAM AIFMDQQETH MIPSICHSNQ TSHIDQQSLQ THTGQTKPEP NKFDPEYEDD
301: EMEYDEDEID AGCASGSETN TGRDYCRHGP PNITSNDDHA THNAGRSSEL MQVEMSERVR DGCSSNLGDE IQMLMVCQNG TSDHSNLHVQ DEPWHFLYEE
401: LCSGYPQSSA AGEDQAMAEN AHYAHTVSLI LHRNNARRQA DGLNTRSYLA VSHRSSFSRW DAGIHGRTVA EGTTRQKMLK SVLLFFNAAC NKPPGDLILR
501: CDEAGARREV DFGASHVMQE RKRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL TKRIQDLESS TVRGAAMPKE KRALLTGKEG PSSSSGSSSS
601: APVATDVQVS IIESDALLEL RCPDRRGLLV TIMQALQEQL RLEVTSVQAS SDHGVLLAEM RAKVREVHGR SSSISQVKRA IHLIISSG

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.