Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G020600.1 | Wheat | nucleus | 86.77 | 87.7 |
| TraesCS5A01G014800.1 | Wheat | nucleus | 87.04 | 83.72 |
| HORVU5Hr1G002090.11 | Barley | nucleus | 83.07 | 82.2 |
| Os12t0632600-00 | Rice | nucleus | 48.68 | 52.27 |
| Zm00001d031167_P002 | Maize | nucleus | 53.44 | 51.4 |
| TraesCS7B01G483600.1 | Wheat | nucleus | 42.59 | 50.16 |
| KXG24110 | Sorghum | nucleus | 52.65 | 50.0 |
| TraesCS4B01G021500.1 | Wheat | nucleus | 40.48 | 42.86 |
| TraesCS5B01G518400.1 | Wheat | nucleus | 36.51 | 42.46 |
| TraesCS4B01G020700.1 | Wheat | nucleus | 39.15 | 40.55 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 38.1 | 39.67 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 38.36 | 39.3 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 35.71 | 38.9 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 37.3 | 38.74 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 37.83 | 38.65 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 36.77 | 38.61 |
| TraesCS5B01G518500.1 | Wheat | nucleus | 32.8 | 38.15 |
| TraesCS5B01G518800.1 | Wheat | nucleus | 31.22 | 37.46 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 32.01 | 36.89 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 28.31 | 28.61 |
| TraesCS4B01G234700.1 | Wheat | nucleus | 20.9 | 26.25 |
| TraesCS4B01G345800.1 | Wheat | nucleus | 21.43 | 26.05 |
| TraesCS4B01G391500.1 | Wheat | nucleus | 19.31 | 22.74 |
| TraesCS4B01G335200.1 | Wheat | nucleus | 11.9 | 18.29 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 11.38 | 17.48 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 12.43 | 17.22 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 12.43 | 17.22 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 12.7 | 17.2 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 11.38 | 16.8 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 11.64 | 15.71 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 9.52 | 15.06 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 12.7 | 11.79 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 12.43 | 10.61 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 12.96 | 10.32 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 15.34 | 10.12 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 14.55 | 9.75 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 14.81 | 9.36 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 16.67 | 9.09 |
| TraesCS1B01G112900.1 | Wheat | nucleus | 14.81 | 8.87 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 14.55 | 8.8 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 11.38 | 8.43 |
| TraesCS1B01G113100.4 | Wheat | nucleus | 14.81 | 8.14 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G013000.2 | EnsemblPlantsGene:TraesCS5B01G013000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:13083031..13085764
Molecular Weight (calculated)
40356.6 Da
IEP (calculated)
8.135
GRAVY (calculated)
-0.370
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDFMQWAMN TLDQQQYHAA AAAAAPPVYG GAAGSSSGGS SAGAAFPSLQ ALRESTAAGA GVRDLRVQVD HHQPSSWSTS SGDSPGAAMD HDAAAAGPGW
101: SPHTARARTR ATSSSRPMSW NFSAAAASAQ LPADIDISPR PAPAPRGHST PAAGRRSGAS AQGTTAGPSA SPGPVQDHII AERRRREKIN QRFIELSTVI
201: PNLKKMDKAT ILGDAVKYVR ELQEKVKTME DDDSAAAAAT TTTTIRSAVL VSKKIKADDE DDDDEDAGES SHGGLPEIEV RVSGEKTVLV RIHCKNARGL
301: LVRVLAEVEE LRLAITHTSV MPFPADTAII TITAKVLYSM HVNSIIARKL CDRIRRCDNP KWDILIDLWK NKRPLYML
101: SPHTARARTR ATSSSRPMSW NFSAAAASAQ LPADIDISPR PAPAPRGHST PAAGRRSGAS AQGTTAGPSA SPGPVQDHII AERRRREKIN QRFIELSTVI
201: PNLKKMDKAT ILGDAVKYVR ELQEKVKTME DDDSAAAAAT TTTTIRSAVL VSKKIKADDE DDDDEDAGES SHGGLPEIEV RVSGEKTVLV RIHCKNARGL
301: LVRVLAEVEE LRLAITHTSV MPFPADTAII TITAKVLYSM HVNSIIARKL CDRIRRCDNP KWDILIDLWK NKRPLYML
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.