Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G306400.1 | Wheat | nucleus | 43.33 | 94.55 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 94.17 | 93.13 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 65.28 | 87.04 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 80.0 | 83.0 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 74.72 | 72.51 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 61.39 | 67.38 |
| Zm00001d038966_P001 | Maize | plastid | 30.28 | 53.43 |
| Zm00001d026009_P001 | Maize | plastid | 30.0 | 52.94 |
| TraesCS4B01G021500.1 | Wheat | nucleus | 49.17 | 49.58 |
| EES10849 | Sorghum | nucleus | 46.94 | 48.99 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 50.28 | 48.92 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 48.61 | 48.21 |
| KXG37866 | Sorghum | nucleus | 49.44 | 47.98 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 48.06 | 46.88 |
| Zm00001d003604_P001 | Maize | nucleus | 43.61 | 46.73 |
| TraesCS5B01G518400.1 | Wheat | nucleus | 41.94 | 46.46 |
| EER93685 | Sorghum | mitochondrion | 46.39 | 44.89 |
| Zm00001d025462_P001 | Maize | nucleus | 41.11 | 44.85 |
| Zm00001d033412_P001 | Maize | nucleus | 45.28 | 44.17 |
| Zm00001d033413_P001 | Maize | nucleus | 38.89 | 44.03 |
| TraesCS4B01G020700.1 | Wheat | nucleus | 44.17 | 43.56 |
| TraesCS5B01G518500.1 | Wheat | nucleus | 38.06 | 42.15 |
| TraesCS5B01G518800.1 | Wheat | nucleus | 35.56 | 40.63 |
| Zm00001d024781_P001 | Maize | nucleus | 38.61 | 39.38 |
| OQU77369 | Sorghum | nucleus | 44.44 | 38.1 |
| TraesCS5B01G013000.2 | Wheat | nucleus | 38.61 | 36.77 |
| OQU75589 | Sorghum | nucleus | 39.17 | 36.62 |
| TraesCS7B01G483600.1 | Wheat | nucleus | 31.67 | 35.51 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 30.56 | 29.41 |
| TraesCS4B01G234700.1 | Wheat | nucleus | 22.78 | 27.24 |
| TraesCS4B01G391500.1 | Wheat | nucleus | 23.61 | 26.48 |
| TraesCS4B01G345800.1 | Wheat | nucleus | 22.78 | 26.37 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 13.33 | 19.51 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 13.61 | 19.14 |
| TraesCS4B01G335200.1 | Wheat | nucleus | 13.06 | 19.11 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 14.72 | 19.0 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 14.17 | 18.68 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 12.22 | 18.41 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 13.89 | 18.32 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 13.33 | 17.14 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 14.17 | 11.51 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 14.44 | 10.95 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 11.94 | 10.57 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 15.56 | 9.36 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 15.83 | 9.12 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 14.17 | 9.04 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 16.67 | 8.66 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 13.33 | 8.38 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 11.39 | 8.04 |
| TraesCS1B01G112900.1 | Wheat | nucleus | 13.61 | 7.77 |
| TraesCS1B01G113100.4 | Wheat | nucleus | 14.17 | 7.41 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G308200.1 | EnsemblPlantsGene:TraesCS4B01G308200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr4B:-:598911215..598913960
Molecular Weight (calculated)
38512.5 Da
IEP (calculated)
5.418
GRAVY (calculated)
-0.316
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHELGQRQG TDLYMLMDDM DDSRLFMQWA VSTLEQQDPG DANGSSEKSA GFPCLQALRD SSELTEAQNS LSSGDDTGSG GGIITPAPDS AVHQGSWSML
101: SPTSGGPFAP SSMSSTGTSN ALSMSWDFGA ALPPQPVSSG GGGTLAAGAP LRSGVSQPTR RASTKSTPYA QDHIMAERKR REKINQRFIE LSAVIPGLKK
201: MDKGTILADA TRYVKELQER VKYLEAAGGN HRSVETVVLV WKPRCLVAPD GEACPGFFSA AGTPANGSQL PEIEAKLSED NVMVRIHCEI NGKGLVARVL
301: AEVEELHLRI VHNNVMPFTV STVIITTMAK VEEGFTVNTE EIVGRLNSAL YQHSSGNKNY
101: SPTSGGPFAP SSMSSTGTSN ALSMSWDFGA ALPPQPVSSG GGGTLAAGAP LRSGVSQPTR RASTKSTPYA QDHIMAERKR REKINQRFIE LSAVIPGLKK
201: MDKGTILADA TRYVKELQER VKYLEAAGGN HRSVETVVLV WKPRCLVAPD GEACPGFFSA AGTPANGSQL PEIEAKLSED NVMVRIHCEI NGKGLVARVL
301: AEVEELHLRI VHNNVMPFTV STVIITTMAK VEEGFTVNTE EIVGRLNSAL YQHSSGNKNY
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.