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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G169300.1
TraesCS2B01G195600.1
TraesCS2D01G176800.1
TraesCS5A01G212800.1
TraesCS5B01G211000.1
TraesCS5D01G219300.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01260.1 TraesCS2A01G169300.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS2B01G195600.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS2D01G176800.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5A01G212800.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5B01G211000.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5D01G219300.2 AT1G19180.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G275500.1 Wheat nucleus 99.0 99.0
TraesCS4A01G028900.1 Wheat nucleus 98.16 98.33
Zm00001d039271_P001 Maize nucleus 68.73 66.72
EER99993 Sorghum nucleus 69.4 66.72
Os01t0235700-01 Rice nucleus 68.56 66.45
Zm00001d009013_P001 Maize nucleus 67.39 65.96
TraesCS3B01G185400.1 Wheat nucleus 67.06 64.16
GSMUA_Achr10P... Banana nucleus 42.14 54.9
GSMUA_Achr7P14640_001 Banana nucleus 43.65 53.93
GSMUA_Achr8P05350_001 Banana nucleus 37.63 49.89
GSMUA_Achr8P26280_001 Banana cytosol 37.29 48.16
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 37.96 47.79
GSMUA_Achr1P28110_001 Banana nucleus 38.96 46.88
VIT_15s0046g00320.t01 Wine grape nucleus 46.49 46.03
PGSC0003DMT400000652 Potato nucleus 45.15 45.15
CDY27319 Canola nucleus 33.28 44.92
KRH68922 Soybean nucleus 41.3 44.91
Solyc01g096050.2.1 Tomato nucleus 45.15 44.63
GSMUA_Achr6P35730_001 Banana nucleus 35.95 43.79
CDY66312 Canola nucleus 32.94 43.01
GSMUA_Achr1P14370_001 Banana cytosol, nucleus, plastid 41.14 42.78
Bra039279.1-P Field mustard nucleus 32.78 42.7
PGSC0003DMT400018046 Potato extracellular, nucleus 40.97 42.39
TraesCS3B01G288700.1 Wheat nucleus 31.27 42.21
TraesCS3B01G284800.1 Wheat nucleus 33.28 41.89
KRH06456 Soybean nucleus 43.14 41.75
KRH47899 Soybean nucleus 43.65 41.69
Solyc05g050560.1.1 Tomato nucleus 40.3 41.62
Bra004532.1-P Field mustard nucleus 33.61 41.36
CDY56874 Canola nucleus 33.95 41.34
CDX80023 Canola nucleus 33.61 41.27
CDX90021 Canola nucleus 36.96 40.93
KRG97199 Soybean nucleus 41.64 40.23
AT1G01260.1 Thale cress nucleus 39.63 40.17
Bra033273.1-P Field mustard nucleus 39.13 40.07
AT2G46510.1 Thale cress nucleus 35.95 37.99
TraesCS5B01G306600.1 Wheat nucleus 12.04 26.37
TraesCS5B01G307100.1 Wheat nucleus 11.71 25.64
TraesCS5B01G307000.1 Wheat nucleus 11.71 25.09
TraesCS5B01G306800.1 Wheat nucleus 11.37 24.29
TraesCS2B01G469300.1 Wheat nucleus 10.37 24.22
TraesCS2B01G469200.1 Wheat nucleus 9.87 23.98
TraesCS1B01G208000.1 Wheat nucleus 27.59 23.81
TraesCS1B01G387900.1 Wheat nucleus 9.2 23.01
TraesCS2B01G428000.1 Wheat nucleus 19.4 20.24
TraesCS4B01G397400.1 Wheat nucleus 18.23 19.33
TraesCS4B01G397800.1 Wheat nucleus 15.55 18.24
TraesCS4B01G020900.1 Wheat nucleus 10.54 17.03
TraesCS4B01G021100.1 Wheat nucleus 10.2 16.8
TraesCS1B01G112900.1 Wheat nucleus 17.56 16.64
TraesCS5B01G518400.1 Wheat nucleus 9.03 16.62
TraesCS4B01G021500.1 Wheat nucleus 9.87 16.53
TraesCS4B01G397300.1 Wheat nucleus 11.2 16.46
TraesCS4B01G308100.1 Wheat nucleus 9.53 16.43
TraesCS4B01G021200.1 Wheat nucleus 10.03 16.26
TraesCS5B01G518800.1 Wheat nucleus 8.53 16.19
TraesCS4B01G020700.1 Wheat nucleus 9.7 15.89
TraesCS4B01G335200.1 Wheat nucleus 6.52 15.85
TraesCS4B01G345800.1 Wheat nucleus 8.19 15.76
TraesCS5B01G518500.1 Wheat nucleus 8.53 15.69
TraesCS4B01G308200.1 Wheat nucleus 9.36 15.56
TraesCS1B01G113100.4 Wheat nucleus 17.89 15.55
TraesCS4B01G234700.1 Wheat nucleus 7.69 15.28
TraesCS7B01G483600.1 Wheat nucleus 8.19 15.26
TraesCS4B01G308300.1 Wheat nucleus 9.2 15.11
TraesCS3B01G029800.1 Wheat nucleus 8.19 14.94
TraesCS5B01G013000.2 Wheat nucleus 9.36 14.81
TraesCS4B01G056600.2 Wheat nucleus 9.2 14.71
TraesCS4B01G391500.1 Wheat nucleus 7.36 13.71
Protein Annotations
EnsemblPlants:TraesCS4B01G276900.1EnsemblPlantsGene:TraesCS4B01G276900Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:MYC/MYB_NInterPro:bHLH_dom
ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF47PFAM:PF00010PFAM:PF14215PFscan:PS50888
SMART:SM00353SUPFAM:SSF47459TIGR:cd00083MapMan:15.5.32::
Description
No Description!
Coordinates
chr4B:+:558578472..558580268
Molecular Weight (calculated)
65566.9 Da
IEP (calculated)
7.207
GRAVY (calculated)
-0.446
Length
598 amino acids
Sequence
(BLAST)
001: MKTEIEEEGT RGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASG LVGLQNKLQD LVEADGKSLC WNYAIFWQLS HTKSGELVLG WGDGSCREPH
101: DNEMNSTTRG DIHDASSLSQ QRMRKRVLER LHTAFAGAEE EDDALRIDQV TDTELFFLAS MYFAFPRHVG GPGQVFATGA PLWIPNNPHK VSPSNYCYRG
201: FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR SVFLGASSKK AASGKHDENG SAQISPGLAK IFGKDLNLSR PLVNTGALPL KMNERSWDMQ
301: KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKSETSQRS NGAAHSPGLS PFQLQNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ
401: AALLGGENGS VDGLCKEQVA PTMEGQQPRK RGRKPANGRV EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAITHITDLQ KKLKEMESER
501: DMFLESGMVD RRVQTPRPEV DIQVVQDEVL VRVMSPMDNY PINNVFQAFE EAEVKVGESK IASNNGKVMH SFVIKSPGSE QQTREKLIAA MSRAMNSM
Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.