Factsheet for TraesCS4B01G397300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT1G63650.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS6A01G259400.1	AT5G24520.1	12917293
AT1G63650.1	TraesCS6B01G286700.1	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G489500.1	Wheat	nucleus	84.77	60.53
TraesCS5A01G558500.1	Wheat	nucleus	83.29	57.95
TraesCS4B01G397400.1	Wheat	nucleus	74.2	53.55
Os01t0577300-00	Rice	cytosol	14.5	48.36
Os01t0576100-00	Rice	nucleus	32.19	41.72
HORVU2Hr1G096810.5	Barley	nucleus	56.51	41.0
TraesCS2B01G428000.1	Wheat	nucleus	57.25	40.66
TraesCS4B01G397800.1	Wheat	nucleus	48.4	38.63
TraesCS4D01G224600.1	Wheat	nucleus	51.84	37.88
OQU82119	Sorghum	nucleus	45.95	34.25
OQU82120	Sorghum	nucleus	46.19	31.97
OQU81560	Sorghum	nucleus	45.95	31.75
OQU82117	Sorghum	nucleus	45.7	31.53
Zm00001d026147_P002	Maize	nucleus	46.93	31.01
Zm00001d000236_P001	Maize	nucleus, plastid	39.8	29.08
GSMUA_Achr11P...	Banana	nucleus	27.27	23.57
GSMUA_Achr8P11430_001	Banana	nucleus	31.2	23.26
GSMUA_Achr5P20600_001	Banana	nucleus	33.42	23.13
PGSC0003DMT400032140	Potato	nucleus	20.15	22.78
GSMUA_Achr11P...	Banana	nucleus	29.48	21.74
GSMUA_Achr11P...	Banana	nucleus	30.47	20.91
VIT_02s0025g03450.t01	Wine grape	nucleus	28.5	18.47
VIT_15s0046g02560.t01	Wine grape	nucleus	29.73	18.36
KRH41187	Soybean	nucleus	28.01	18.1
Bra027653.1-P	Field mustard	nucleus	26.29	17.95
TraesCS2B01G469300.1	Wheat	nucleus	11.06	17.58
Solyc08g081140.2.1	Tomato	nucleus	27.03	17.57
Bra027796.1-P	Field mustard	nucleus	26.04	17.49
TraesCS2B01G469200.1	Wheat	nucleus	10.57	17.48
AT1G63650.1	Thale cress	nucleus	25.55	17.45
KRH59908	Soybean	nucleus	26.78	17.27
KRH48144	Soybean	nucleus	27.27	17.08
Bra025508.1-P	Field mustard	nucleus	26.29	17.01
KRH65046	Soybean	nucleus	26.78	16.85
AT5G41315.2	Thale cress	nucleus	26.29	16.59
TraesCS5B01G306600.1	Wheat	nucleus	11.06	16.48
TraesCS5B01G306800.1	Wheat	nucleus	11.3	16.43
TraesCS5B01G307000.1	Wheat	nucleus	11.06	16.13
TraesCS5B01G307100.1	Wheat	nucleus	10.81	16.12
TraesCS4B01G234700.1	Wheat	nucleus	11.79	15.95
TraesCS1B01G387900.1	Wheat	nucleus	8.85	15.06
TraesCS4B01G345800.1	Wheat	nucleus	11.3	14.79
TraesCS5B01G518400.1	Wheat	nucleus	11.3	14.15
AT4G00480.2	Thale cress	nucleus	20.15	14.14
TraesCS7B01G483600.1	Wheat	nucleus	11.06	14.02
TraesCS4B01G391500.1	Wheat	nucleus	11.06	14.02
TraesCS3B01G288700.1	Wheat	nucleus	14.99	13.77
TraesCS1B01G112900.1	Wheat	nucleus	21.13	13.63
TraesCS4B01G335200.1	Wheat	nucleus	8.11	13.41
TraesCS1B01G113100.4	Wheat	nucleus	22.11	13.08
TraesCS5B01G518800.1	Wheat	nucleus	10.07	13.02
TraesCS5B01G518500.1	Wheat	nucleus	10.32	12.92
TraesCS3B01G284800.1	Wheat	nucleus	14.99	12.84
TraesCS5B01G013000.2	Wheat	nucleus	11.79	12.7
TraesCS4B01G308100.1	Wheat	nucleus	10.81	12.68
TraesCS4B01G020900.1	Wheat	nucleus	11.3	12.43
Bra000970.1-P	Field mustard	nucleus	19.9	12.39
TraesCS4B01G020700.1	Wheat	nucleus	11.06	12.33
TraesCS4B01G021200.1	Wheat	nucleus	11.06	12.2
TraesCS4B01G021100.1	Wheat	nucleus	10.81	12.12
TraesCS4B01G308300.1	Wheat	nucleus	10.81	12.09
TraesCS4B01G021500.1	Wheat	nucleus	10.57	12.04
TraesCS4B01G308200.1	Wheat	nucleus	10.57	11.94
TraesCS4B01G056600.2	Wheat	nucleus	10.32	11.23
TraesCS4B01G276900.1	Wheat	nucleus	16.46	11.2
TraesCS3B01G029800.1	Wheat	nucleus	8.85	10.98
Bra037343.1-P	Field mustard	cytosol	19.16	10.97
TraesCS3B01G185400.1	Wheat	nucleus	16.71	10.88
TraesCS1B01G208000.1	Wheat	nucleus	16.95	9.96
CDX77694	Canola	nucleus	4.42	7.11

Protein Annotations

EnsemblPlants:TraesCS4B01G397300.1	EnsemblPlantsGene:TraesCS4B01G397300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr4B:+:671696059..671698835

Molecular Weight (calculated)

44686.9 Da

IEP (calculated)

5.048

GRAVY (calculated)

-0.233

Length

407 amino acids

Sequence
(BLAST)

001: MMLAHATGRL NQTAPIQTVV CIPFMGGVLE LGTSDLVXXX XXXXXQIGTS FWELPFSACS ESEVPSSSPS TNETGNGEVD IVMLEDLDHN VVDGMISKLG
101: EVECMSDINL DHVSEEVDKF YGLIKELDMR SLEDNWVMER SFEYMSSLEM APDMDAPSID DAVITLSSFV KGSHPSCFTV WKRSSDWEHV VARVTGESQK
201: LLKKAVAGGA WIARPQESNI KTHVLSERRR REKLNDMFLV LKSMIPSINK MDKASILAET ITYLRELEQR VEELQSSRTP SLRPNEAPGQ GLHEVVGKKK
301: IKLSTRSKRK ALEMEREDDD CPNNVVNVTV MEKEVLLEVQ CRWKELLMTR VFDVIKSLRL DIVSMHASTP EGHLDLKIRA TQQFAVGYAA IAPGMITEAL
401: QKAICNR

Best Arabidopsis Sequence Match ( AT5G41315.2 )
(BLAST)

001: MGYRDEETMA TGQNRTTVPE NLKKHLAVSV RNIQWSYGIF WSVSASQSGV LEWGDGYYNG DIKTRKTIQA SEIKADQLGL RRSEQLSELY ESLSVAESSS
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.