Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026147_P002 | Maize | nucleus | 73.79 | 66.72 |
| OQU82119 | Sorghum | nucleus | 55.66 | 56.78 |
| TraesCS2D01G406800.1 | Wheat | plastid | 47.4 | 56.77 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 57.09 | 56.08 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 55.3 | 54.9 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 54.04 | 53.94 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 54.94 | 53.4 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 54.04 | 52.99 |
| TraesCSU01G228400.1 | Wheat | nucleus | 34.11 | 51.77 |
| TraesCSU01G237100.1 | Wheat | nucleus | 34.11 | 51.77 |
| TraesCSU01G116000.1 | Wheat | nucleus | 41.83 | 51.1 |
| Os04t0557200-01 | Rice | cytosol, nucleus, peroxisome | 51.17 | 50.98 |
| Os04t0557800-00 | Rice | mitochondrion | 51.71 | 50.17 |
| Os01t0577300-00 | Rice | cytosol | 10.95 | 50.0 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 49.91 | 49.91 |
| TraesCSU01G029400.1 | Wheat | nucleus | 50.99 | 49.65 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 50.63 | 49.47 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 49.91 | 49.29 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 50.81 | 48.38 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 48.83 | 46.18 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 41.11 | 44.9 |
| Os01t0576100-00 | Rice | nucleus | 23.34 | 41.4 |
| GSMUA_Achr11P... | Banana | nucleus | 34.83 | 41.19 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 29.08 | 39.8 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 35.91 | 36.63 |
| Os11t0258700-00 | Rice | mitochondrion | 31.6 | 36.44 |
| GSMUA_Achr11P... | Banana | nucleus | 33.57 | 33.88 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 36.8 | 32.64 |
| GSMUA_Achr11P... | Banana | nucleus | 33.75 | 31.7 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 33.39 | 31.63 |
| Solyc08g081140.2.1 | Tomato | nucleus | 34.47 | 30.67 |
| VIT_15s0046g02560.t01 | Wine grape | nucleus | 35.37 | 29.89 |
| Bra027796.1-P | Field mustard | nucleus | 32.32 | 29.7 |
| AT1G63650.1 | Thale cress | nucleus | 31.6 | 29.53 |
| Bra027653.1-P | Field mustard | nucleus | 31.42 | 29.36 |
| KRH41187 | Soybean | nucleus | 32.85 | 29.05 |
| Bra025508.1-P | Field mustard | nucleus | 32.32 | 28.62 |
| KRH59908 | Soybean | nucleus | 32.32 | 28.53 |
| AT5G41315.2 | Thale cress | nucleus | 32.32 | 27.91 |
| KRH65046 | Soybean | nucleus | 31.24 | 26.89 |
| KRH48144 | Soybean | nucleus | 31.24 | 26.77 |
| AT4G00480.2 | Thale cress | nucleus | 25.67 | 24.66 |
| PGSC0003DMT400032140 | Potato | nucleus | 15.8 | 24.44 |
| Zm00001d019170_P001 | Maize | nucleus | 27.47 | 22.7 |
| Bra000970.1-P | Field mustard | nucleus | 26.39 | 22.48 |
| Zm00001d043706_P001 | Maize | nucleus | 17.41 | 20.77 |
| Zm00001d031717_P001 | Maize | nucleus | 9.34 | 20.47 |
| Bra037343.1-P | Field mustard | cytosol | 25.13 | 19.69 |
| Zm00001d052728_P001 | Maize | nucleus | 9.69 | 19.64 |
| CDX77694 | Canola | nucleus | 8.62 | 18.97 |
| Zm00001d006150_P001 | Maize | nucleus | 9.87 | 18.9 |
| Zm00001d026009_P001 | Maize | plastid | 6.64 | 18.14 |
| Zm00001d038966_P001 | Maize | plastid | 6.64 | 18.14 |
| Zm00001d021164_P001 | Maize | nucleus | 9.16 | 17.59 |
| Zm00001d033413_P001 | Maize | nucleus | 9.69 | 16.98 |
| Zm00001d028315_P001 | Maize | cytosol | 3.95 | 16.3 |
| Zm00001d028312_P001 | Maize | nucleus | 9.34 | 16.25 |
| Zm00001d039271_P001 | Maize | nucleus | 17.59 | 15.91 |
| Zm00001d033848_P004 | Maize | nucleus | 10.23 | 15.66 |
| Zm00001d009013_P001 | Maize | nucleus | 17.06 | 15.55 |
| Zm00001d028314_P001 | Maize | nucleus | 5.21 | 15.51 |
| Zm00001d047017_P001 | Maize | nucleus | 19.39 | 15.36 |
| Zm00001d030232_P001 | Maize | nucleus | 8.62 | 15.0 |
| Zm00001d030028_P001 | Maize | nucleus | 18.67 | 14.75 |
| Zm00001d003604_P001 | Maize | nucleus | 8.8 | 14.58 |
| Zm00001d013370_P001 | Maize | plastid | 9.52 | 14.21 |
| Zm00001d025462_P001 | Maize | nucleus | 8.08 | 13.64 |
| Zm00001d024781_P001 | Maize | nucleus | 8.62 | 13.6 |
| Zm00001d033412_P001 | Maize | nucleus | 8.98 | 13.55 |
| Zm00001d031167_P002 | Maize | nucleus | 9.52 | 13.49 |
| Zm00001d033407_P001 | Maize | nucleus | 8.62 | 13.48 |
| Zm00001d007536_P001 | Maize | plastid | 10.95 | 10.05 |
Protein Annotations
| EntrezGene:103646088 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:AAL75975.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF94 |
| UniProt:Q8S470 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000A0B34 | EnsemblPlantsGene:Zm00001d000236 | EnsemblPlants:Zm00001d000236_P001 |
| EnsemblPlants:Zm00001d000236_T001 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
colored plant1 colored plant1
Coordinates
chrB73V4_ctg44:+:29069..33275
Molecular Weight (calculated)
60318.4 Da
IEP (calculated)
5.298
GRAVY (calculated)
-0.296
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSACPAQE ELLQPAGRPL RKQLAAAARS INWSYSLFWS ISSTQRPRVL TWTDGFYNGE VKTRKISHSV ELTADQLLMQ RSEQLRELYE ALQSGECDRR
101: AARPVGSLSP EDLGDTEWYY VICMTYAFLP GQGLPGRSSA SNEHVWLCNA HLAGSKDFPR ALLAKVPEDP DLINRATAAF REPQCPIYSE QPSSNPSADE
201: TGEAADIAVF EGLDHNAMDM ETAGIAVFEG LDHNAMDMET VTAAAGRHGT GQELGEADSP SNASLEHITK GIDEFYNLCE EMDVQPLEDA WIMDGSNFEV
301: PSSALPVDGS SAPADGSRAT SFVAWTRSSQ SCSGEAAAVP VIEEPQKLLK KAVAGGGAWA NTNCGGGGTT VTAQENGAKN HVMLERKRRE KLNEMFLVLK
401: SLVPSIHKVD KASILAETIA YLKELQRRVQ ELESRRQGGS GCVSKKVCVG SNSKRKSPEF AGGAKEHPWV LPMDGTSNVT VTVSDRDVLL EVQCLWEKLL
501: MTRVFDAIKS LHLDALSVQA SALDGFMRLK IGAQFAGSGA VVPGMISQSL RKAIGKR
101: AARPVGSLSP EDLGDTEWYY VICMTYAFLP GQGLPGRSSA SNEHVWLCNA HLAGSKDFPR ALLAKVPEDP DLINRATAAF REPQCPIYSE QPSSNPSADE
201: TGEAADIAVF EGLDHNAMDM ETAGIAVFEG LDHNAMDMET VTAAAGRHGT GQELGEADSP SNASLEHITK GIDEFYNLCE EMDVQPLEDA WIMDGSNFEV
301: PSSALPVDGS SAPADGSRAT SFVAWTRSSQ SCSGEAAAVP VIEEPQKLLK KAVAGGGAWA NTNCGGGGTT VTAQENGAKN HVMLERKRRE KLNEMFLVLK
401: SLVPSIHKVD KASILAETIA YLKELQRRVQ ELESRRQGGS GCVSKKVCVG SNSKRKSPEF AGGAKEHPWV LPMDGTSNVT VTVSDRDVLL EVQCLWEKLL
501: MTRVFDAIKS LHLDALSVQA SALDGFMRLK IGAQFAGSGA VVPGMISQSL RKAIGKR
001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
Arabidopsis Description
ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.