Factsheet for VIT_15s0046g02560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g03450.t01	Wine grape	nucleus	55.39	58.12
KRH65046	Soybean	nucleus	54.93	55.95
KRH48144	Soybean	nucleus	54.78	55.54
GSMUA_Achr11P...	Banana	nucleus	38.7	54.14
GSMUA_Achr8P11430_001	Banana	nucleus	41.88	50.55
Os04t0557500-00	Rice	mitochondrion, plasma membrane	13.66	50.0
GSMUA_Achr11P...	Banana	nucleus	43.7	48.57
GSMUA_Achr11P...	Banana	nucleus	40.06	47.83
GSMUA_Achr5P20600_001	Banana	nucleus	41.27	46.26
HORVU2Hr1G096810.5	Barley	nucleus	33.54	39.39
TraesCS2D01G406900.1	Wheat	nucleus	33.84	39.33
TraesCS5A01G489500.1	Wheat	nucleus	33.84	39.12
TraesCSU01G116000.1	Wheat	nucleus	26.71	38.6
TraesCS4B01G397400.1	Wheat	nucleus	32.78	38.3
TraesCS2A01G409400.1	Wheat	nucleus	32.93	38.2
TraesCS2A01G409600.2	Wheat	nucleus, plastid	32.32	38.17
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	32.02	37.75
TraesCS5A01G558500.1	Wheat	nucleus	33.38	37.61
TraesCS2B01G428000.1	Wheat	nucleus	32.63	37.52
TraesCS2D01G406800.1	Wheat	plastid	26.4	37.42
OQU82120	Sorghum	nucleus	33.08	37.07
TraesCSU01G029400.1	Wheat	nucleus	32.02	36.89
Os04t0557800-00	Rice	mitochondrion	31.26	35.89
Zm00001d000236_P001	Maize	nucleus, plastid	29.89	35.37
Zm00001d026147_P002	Maize	nucleus	32.93	35.23
OQU81560	Sorghum	nucleus	31.41	35.14
TraesCS4B01G397800.1	Wheat	nucleus	27.16	35.1
TraesCS2D01G575600.3	Wheat	nucleus, plastid	31.11	34.8
OQU82117	Sorghum	nucleus	30.8	34.41
TraesCS4D01G224600.1	Wheat	nucleus	28.98	34.29
VIT_07s0104g00090.t01	Wine grape	nucleus	33.99	32.18
Os01t0577300-00	Rice	cytosol	5.61	30.33
TraesCS4B01G397300.1	Wheat	nucleus	18.36	29.73
OQU82119	Sorghum	nucleus	22.76	27.47
TraesCSU01G237100.1	Wheat	nucleus	15.02	26.98
TraesCSU01G228400.1	Wheat	nucleus	15.02	26.98
Os11t0258700-00	Rice	mitochondrion	17.3	23.6
Os01t0576100-00	Rice	nucleus	10.93	22.93
VIT_00s0824g00020.t01	Wine grape	nucleus	5.92	22.81
VIT_02s0025g02610.t01	Wine grape	nucleus	11.84	21.61
VIT_15s0048g02820.t01	Wine grape	nucleus	15.48	20.52
VIT_07s0205g00160.t01	Wine grape	nucleus	5.77	20.43
VIT_07s0141g01060.t01	Wine grape	nucleus	14.57	19.55
VIT_02s0012g01320.t01	Wine grape	nucleus	18.36	18.25
VIT_15s0046g00320.t01	Wine grape	nucleus	16.54	18.05
VIT_03s0088g01240.t01	Wine grape	nucleus	9.41	18.02
VIT_00s0927g00010.t01	Wine grape	nucleus	6.07	17.54
VIT_07s0205g00170.t01	Wine grape	cytosol	3.19	16.67
VIT_00s1314g00010.t01	Wine grape	nucleus	8.35	16.47
VIT_07s0205g00190.t01	Wine grape	nucleus	8.04	15.68
VIT_07s0205g00180.t01	Wine grape	nucleus	8.04	15.14
VIT_00s0384g00020.t01	Wine grape	nucleus	3.79	12.69

Protein Annotations

EntrezGene:100233025	wikigene:100233025	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:ABM92332	ProteinID:ABM92332.3
ProteinID:CCB62425	ProteinID:CCB62425.1	ncoils:Coil	EMBL:EF193002	UniProt:F6I629	EMBL:FN596755
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007267	GO:GO:0007275
GO:GO:0008150	GO:GO:0009987	GO:GO:0030154	GO:GO:0046983	GO:GO:0048629	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	EntrezGene:MYCA1	wikigene:MYCA1	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF38	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC61713
UniParc:UPI000210A2A1	ArrayExpress:VIT_15s0046g02560	EnsemblPlantsGene:VIT_15s0046g02560	EnsemblPlants:VIT_15s0046g02560.t01	RefSeq:XP_010661717.1	InterPro:bHLH_dom

Description

No Description!

Coordinates

chr15:-:19338905..19344017

Molecular Weight (calculated)

74355.0 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.517

Length

659 amino acids

Sequence
(BLAST)

001: MANGVQNQEG VPENLSKQLA VAVRSIQWSY AIFWSLSTRQ QGVLEWSGGY YNGDIKTRKT VQEMELKADK MGLQRSEQLR ELYESLLEGE TDQQSKRPSA
101: ALSPEDLSDA EWYYLVCMSF VFNPGEGLPG RALANGQSIW LCDAQYADSK VFSRSLLAKS ASIQTVVCFP HMGGVIELGV TELVPEDPSL IQHIKACLLE
201: LSKPICSEKS SFVPCNTDDD KDRMCAKVDH DIVETMALEK LYPATEEIKF EQEGMSELHG NIHEEHNIGS PDDCSNGCED DHQTEDSFML EGINGGASQV
301: QSWHFVDDDF SNGVQGSMDS SDCISQAFVN QERIHSSPKG ENVNNVRLKD LQECNDTKFS SLDLGADDDL HYRRTISTVL RKSHPLIGNS CFRCYDIKSS
401: FITWKKGGML DAQKPQTQQR ILKKILFTVP LMHGGCGFKS QKENAGRDGL WKSGSDGICK QHALSDKKRE KEKFLVLRSM VPSINKIDEV SILGDTIEYL
501: KKLEARVEEL ETSMDLQTEL EARARQKYLD MVEQTSDNYD DKMIDDGKKL WINKRKACDI DETDLEINEI IPKDSLPSSD MKVRINEQEV LIEMRCPWRE
601: YLLLDIMDAI NNLHLDCHSV QSSNHDGFLT LTLKSKFRGR AVASAGMIKQ ALWRITSKC

Best Arabidopsis Sequence Match ( AT5G41315.2 )
(BLAST)

001: MGYRDEETMA TGQNRTTVPE NLKKHLAVSV RNIQWSYGIF WSVSASQSGV LEWGDGYYNG DIKTRKTIQA SEIKADQLGL RRSEQLSELY ESLSVAESSS
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC

Arabidopsis Description

GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.