Factsheet for VIT_00s0927g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0384g00020.t01	Wine grape	nucleus	82.02	94.92
KRH42021	Soybean	nucleus	32.02	37.44
VIT_00s0824g00020.t01	Wine grape	nucleus	26.32	35.09
VIT_07s0205g00180.t01	Wine grape	nucleus	46.93	30.57
VIT_00s1314g00010.t01	Wine grape	nucleus	44.74	30.54
VIT_07s0205g00160.t01	Wine grape	nucleus	24.12	29.57
VIT_07s0205g00190.t01	Wine grape	nucleus	43.42	29.29
PGSC0003DMT400078698	Potato	nucleus	26.32	28.71
GSMUA_Achr7P27600_001	Banana	nucleus	39.04	26.65
GSMUA_Achr3P30620_001	Banana	nucleus	37.28	26.23
VIT_03s0088g01240.t01	Wine grape	nucleus	39.47	26.16
AT4G37850.1	Thale cress	nucleus	37.28	25.91
GSMUA_Achr8P05170_001	Banana	nucleus	22.37	25.37
GSMUA_Achr3P26180_001	Banana	nucleus	32.46	25.08
GSMUA_Achr8P26460_001	Banana	nucleus	35.96	24.7
Bra030210.1-P	Field mustard	nucleus	34.65	24.53
CDY25628	Canola	nucleus	34.65	24.53
GSMUA_AchrUn_...	Banana	nucleus	34.65	24.53
GSMUA_Achr2P08590_001	Banana	nucleus	28.51	24.44
CDX75679	Canola	nucleus	35.96	24.4
Bra011790.1-P	Field mustard	nucleus	35.96	24.4
AT2G22750.3	Thale cress	nucleus	35.53	24.32
CDX89511	Canola	nucleus	33.77	23.99
Bra010617.1-P	Field mustard	nucleus	35.09	23.95
CDY72199	Canola	nucleus	35.09	23.95
CDY13737	Canola	nucleus	30.7	23.73
Bra039924.1-P	Field mustard	nucleus	32.46	23.64
GSMUA_Achr4P03160_001	Banana	nucleus	33.77	23.55
CDX69336	Canola	nucleus	34.65	23.37
CDY49678	Canola	nucleus	34.21	23.35
CDX76899	Canola	nucleus	32.46	22.91
GSMUA_Achr7P00800_001	Banana	cytosol	22.81	22.22
PGSC0003DMT400033757	Potato	nucleus	20.18	21.9
HORVU4Hr1G009440.2	Barley	nucleus	32.02	21.41
KXG37671	Sorghum	nucleus	33.33	21.35
Os03t0725800-01	Rice	nucleus	32.89	20.89
Zm00001d033848_P004	Maize	nucleus	33.33	20.88
Solyc06g064590.1.1	Tomato	nucleus	25.44	20.64
PGSC0003DMT400078699	Potato	nucleus	28.95	20.43
Solyc02g091820.1.1	Tomato	nucleus	28.95	20.25
TraesCS4B01G056600.2	Wheat	nucleus	32.46	19.79
TraesCS4D01G056900.2	Wheat	nucleus	32.46	19.73
TraesCS4A01G257900.2	Wheat	nucleus	32.02	19.36
GSMUA_Achr4P23070_001	Banana	nucleus	26.32	19.17
Zm00001d013370_P001	Maize	plastid	31.14	19.03
Solyc06g064580.1.1	Tomato	nucleus	25.0	18.75
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	18.86	18.38
Solyc02g091810.1.1	Tomato	nucleus	25.44	18.24
GSMUA_Achr4P14580_001	Banana	nucleus	25.44	17.47
GSMUA_Achr4P03170_001	Banana	nucleus	24.12	16.13
VIT_02s0025g02610.t01	Wine grape	nucleus	19.74	12.47
VIT_07s0141g01060.t01	Wine grape	nucleus	23.68	11.0
VIT_15s0048g02820.t01	Wine grape	nucleus	22.37	10.26
VIT_15s0046g00320.t01	Wine grape	nucleus	25.44	9.6
VIT_02s0012g01320.t01	Wine grape	nucleus	24.12	8.3
VIT_07s0104g00090.t01	Wine grape	nucleus	20.18	6.61
VIT_02s0025g03450.t01	Wine grape	nucleus	17.54	6.37
VIT_15s0046g02560.t01	Wine grape	nucleus	17.54	6.07
VIT_07s0205g00170.t01	Wine grape	cytosol	3.07	5.56

Protein Annotations

EntrezGene:100258597	wikigene:100258597	EntrezGene:100852481	wikigene:100852481	MapMan:15.5.32	MapMan:25.4.1.7
Gene3D:4.10.280.10	ProteinID:CCB45353	ProteinID:CCB45353.1	ncoils:Coil	UniProt:F6GZG7	EMBL:FN595085
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100258597	wikigene:LOC100258597	EntrezGene:LOC100852481	wikigene:LOC100852481	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF100	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002108F9B
ArrayExpress:VIT_00s0927g00010	EnsemblPlantsGene:VIT_00s0927g00010	EnsemblPlants:VIT_00s0927g00010.t01	RefSeq:XP_002276304	RefSeq:XP_002276304.2	RefSeq:XP_003635290
RefSeq:XP_003635290.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:36907508..36908553

Molecular Weight (calculated)

25344.3 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.784

Length

228 amino acids

Sequence
(BLAST)

001: GIEDPTFIHQ YQMQSFGNPV DHGFNFQSFS SDSYSSYLSF SPKTTPNFCS SAVENFQTDI ERTAKQLKTN SWESSTSNHI TPKASSSSSS QLLSFGNSNS
101: PLPTDVQNFH ENLDCTVKPK DEAASHGNMN FASVISKSSY GNQNHGHGTK RVGTPITRNP LNNHDHVIAE RKRREKLTQR FIALSAIVPG LKKTDKASVL
201: GDAIKYLKQL QERVKTLEEQ TTKKTVES

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.