Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g064590.1.1 | Tomato | nucleus | 30.59 | 33.1 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 21.05 | 31.84 |
| Solyc01g106460.2.1 | Tomato | nucleus | 25.0 | 31.28 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 22.37 | 29.06 |
| CDY13737 | Canola | nucleus | 26.64 | 27.46 |
| CDX89511 | Canola | nucleus | 28.95 | 27.41 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 29.93 | 27.25 |
| Bra039924.1-P | Field mustard | nucleus | 27.96 | 27.16 |
| AT2G22750.3 | Thale cress | nucleus | 29.61 | 27.03 |
| AT4G37850.1 | Thale cress | nucleus | 28.95 | 26.83 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 20.39 | 26.5 |
| Solyc02g091820.1.1 | Tomato | nucleus | 28.29 | 26.38 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 23.03 | 26.32 |
| CDX76899 | Canola | nucleus | 27.96 | 26.32 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 25.33 | 26.1 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 27.63 | 25.93 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 28.29 | 25.9 |
| CDX75679 | Canola | nucleus | 28.62 | 25.89 |
| Bra011790.1-P | Field mustard | nucleus | 28.62 | 25.89 |
| CDY25628 | Canola | nucleus | 27.3 | 25.78 |
| Bra030210.1-P | Field mustard | nucleus | 27.3 | 25.78 |
| CDY72199 | Canola | nucleus | 27.96 | 25.45 |
| Bra010617.1-P | Field mustard | nucleus | 27.96 | 25.45 |
| CDX69336 | Canola | nucleus | 28.29 | 25.44 |
| CDY49678 | Canola | nucleus | 27.63 | 25.15 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 26.97 | 25.08 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 18.75 | 25.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.32 | 24.84 |
| KXG37671 | Sorghum | nucleus | 28.62 | 24.44 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 27.3 | 24.34 |
| Os03t0725800-01 | Rice | nucleus | 28.62 | 24.23 |
| Solyc02g091810.1.1 | Tomato | nucleus | 25.33 | 24.21 |
| KRH42021 | Soybean | nucleus | 15.46 | 24.1 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 24.34 | 23.64 |
| Zm00001d033848_P004 | Maize | nucleus | 27.63 | 23.08 |
| Solyc02g091800.2.1 | Tomato | nucleus | 26.32 | 23.05 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 28.29 | 22.99 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 27.96 | 22.67 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 27.96 | 22.55 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 23.36 | 21.39 |
| Zm00001d013370_P001 | Maize | plastid | 25.66 | 20.91 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 12.5 | 19.29 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 21.38 | 19.06 |
| Solyc08g083170.1.1 | Tomato | extracellular | 16.78 | 13.18 |
| Solyc10g009290.1.1 | Tomato | nucleus | 17.43 | 11.75 |
| Solyc10g009270.2.1 | Tomato | nucleus | 14.47 | 11.2 |
| Solyc06g083980.1.1 | Tomato | nucleus | 17.11 | 10.9 |
| Solyc01g096370.2.1 | Tomato | nucleus | 15.79 | 10.67 |
| Solyc08g008600.2.1 | Tomato | nucleus | 15.79 | 10.62 |
| Solyc08g076930.1.1 | Tomato | nucleus | 20.72 | 9.14 |
| Solyc08g005050.2.1 | Tomato | nucleus | 12.83 | 8.41 |
| Solyc08g081140.2.1 | Tomato | nucleus | 17.11 | 8.31 |
| Solyc01g096050.2.1 | Tomato | nucleus | 16.12 | 8.1 |
| Solyc09g065100.1.1 | Tomato | nucleus | 16.78 | 7.5 |
| Solyc05g050560.1.1 | Tomato | nucleus | 13.16 | 6.91 |
Protein Annotations
| EnsemblPlants:Solyc06g064580.1.1 | EnsemblPlantsGene:Solyc06g064580.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF75 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002766EFA | UniProt:K4C788 | MapMan:15.5.32 | MapMan:25.4.1.7 | : |
Description
No Description!
Coordinates
chr6:+:40244576..40246933
Molecular Weight (calculated)
34450.7 Da
IEP (calculated)
5.721
GRAVY (calculated)
-0.428
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MENTTFNNNI IGDEEAPFEF KNLLSEMFTS LPNQNPTTSN SLENVPKIAF SCSSPSSNNS SSSSQNIISF GNKADSFFLE DNELDYDMIT EKVIMSNVNI
101: SNSSMASKRI CRSPLQSQDH LLAERKRRER FSQLFALLAK AIPQLKKLDK ASILEDAIKY IGELQERVSS LEEAARTIKS STNLIESTHP TLVHKQYSHD
201: DHVDDLESKR HENINDIKVQ ILDKNVLIGI HCNKQMRSIF SIIAGIMEKL HLTIHHIRVS PSNHTSLHYI SILAEIDENV DIKVQDVEKA FELHLLTIQD
301: STQE
101: SNSSMASKRI CRSPLQSQDH LLAERKRRER FSQLFALLAK AIPQLKKLDK ASILEDAIKY IGELQERVSS LEEAARTIKS STNLIESTHP TLVHKQYSHD
201: DHVDDLESKR HENINDIKVQ ILDKNVLIGI HCNKQMRSIF SIIAGIMEKL HLTIHHIRVS PSNHTSLHYI SILAEIDENV DIKVQDVEKA FELHLLTIQD
301: STQE
001: MNSLVGDVPQ SLSSLDDTTT CYNLDASCNK SLVEERPSKI LKTTHISPNL HPFSSSNPPP PKHQPSSRIL SFEKTGLHVM NHNSPNLIFS PKDEEIGLPE
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.