Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030210.1-P | Field mustard | nucleus | 81.38 | 84.16 |
| CDY25628 | Canola | nucleus | 80.78 | 83.54 |
| CDX89511 | Canola | nucleus | 80.48 | 83.49 |
| CDX76899 | Canola | nucleus | 78.08 | 80.5 |
| CDY13737 | Canola | nucleus | 71.17 | 80.34 |
| Bra039924.1-P | Field mustard | nucleus | 75.38 | 80.19 |
| AT4G37850.1 | Thale cress | nucleus | 60.36 | 61.28 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 26.43 | 43.78 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 28.83 | 41.03 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 31.23 | 39.1 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 33.33 | 37.63 |
| PGSC0003DMT400033757 | Potato | nucleus | 23.42 | 37.14 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 36.94 | 37.05 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 36.94 | 36.83 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 35.44 | 36.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.83 | 36.02 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 24.32 | 35.53 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 34.23 | 34.86 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 24.02 | 34.19 |
| KXG37671 | Sorghum | nucleus | 36.34 | 33.99 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 31.83 | 33.87 |
| AT2G22760.1 | Thale cress | nucleus | 29.13 | 32.88 |
| KRH42021 | Soybean | nucleus | 19.22 | 32.82 |
| Zm00001d033848_P004 | Maize | nucleus | 35.74 | 32.69 |
| PGSC0003DMT400078698 | Potato | nucleus | 20.42 | 32.54 |
| Solyc02g091810.1.1 | Tomato | nucleus | 30.93 | 32.39 |
| Os03t0725800-01 | Rice | nucleus | 34.83 | 32.31 |
| Solyc02g091820.1.1 | Tomato | nucleus | 31.53 | 32.21 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 31.83 | 31.09 |
| Zm00001d013370_P001 | Maize | plastid | 34.53 | 30.83 |
| AT2G22770.1 | Thale cress | nucleus | 29.13 | 30.31 |
| PGSC0003DMT400078699 | Potato | nucleus | 29.13 | 30.03 |
| Solyc06g064580.1.1 | Tomato | nucleus | 27.03 | 29.61 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 17.42 | 29.44 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 33.03 | 29.33 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 32.73 | 29.14 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 32.73 | 28.91 |
| Solyc06g064590.1.1 | Tomato | nucleus | 23.42 | 27.76 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 24.92 | 25.0 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 24.92 | 24.34 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 18.02 | 14.18 |
| AT4G16430.1 | Thale cress | nucleus | 16.52 | 11.78 |
| AT5G46760.1 | Thale cress | nucleus | 20.72 | 11.66 |
| AT4G17880.1 | Thale cress | nucleus | 20.12 | 11.38 |
| AT1G32640.1 | Thale cress | nucleus | 21.02 | 11.24 |
| AT1G01260.1 | Thale cress | nucleus | 19.82 | 11.19 |
| AT5G46830.1 | Thale cress | nucleus | 16.52 | 10.76 |
| AT4G09820.1 | Thale cress | nucleus | 15.32 | 9.85 |
| AT2G46510.1 | Thale cress | nucleus | 16.22 | 9.54 |
| AT1G63650.1 | Thale cress | nucleus | 16.82 | 9.4 |
| AT5G41315.2 | Thale cress | nucleus | 15.62 | 8.06 |
| AT4G00480.2 | Thale cress | nucleus | 12.91 | 7.41 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | EntrezGene:816805 | UniProt:A0A1P8B0N4 | ProteinID:AAC63586.1 |
| ProteinID:AAM15234.1 | ProteinID:AEC07349.1 | ProteinID:AEC07350.1 | EMBL:AF488562 | ProteinID:ANM62477.1 | ProteinID:ANM62479.1 |
| ArrayExpress:AT2G22750 | EnsemblPlantsGene:AT2G22750 | RefSeq:AT2G22750 | TAIR:AT2G22750 | RefSeq:AT2G22750-TAIR-G | EnsemblPlants:AT2G22750.3 |
| Unigene:At.39395 | ncoils:Coil | EMBL:DQ446549 | EMBL:DQ653015 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_001077944.1 | RefSeq:NP_001324633.1 | RefSeq:NP_001324635.1 | RefSeq:NP_179860.2 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000152B3C2 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
Coordinates
chr2:+:9671673..9673904
Molecular Weight (calculated)
37161.5 Da
IEP (calculated)
9.062
GRAVY (calculated)
-0.492
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAMNVFST KWSSELDIEE YSIIHQFHMN SLVGDVPQSL SSLDDTTTCY NLDASCNKSL VEERPSKILK TTHISPNLHP FSSSNPPPPK HQPSSRILSF
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.