Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024993.1-P | Field mustard | nucleus | 44.03 | 59.68 |
| Bra024992.1-P | Field mustard | nucleus | 30.92 | 58.3 |
| CDY33482 | Canola | nucleus | 30.72 | 57.93 |
| CDX77699 | Canola | nucleus | 30.72 | 57.93 |
| CDX77696 | Canola | nucleus | 12.13 | 51.67 |
| AT1G32640.1 | Thale cress | nucleus | 53.62 | 43.98 |
| Solyc08g005050.2.1 | Tomato | nucleus | 34.64 | 38.15 |
| PGSC0003DMT400002963 | Potato | nucleus | 43.84 | 37.46 |
| KRH75613 | Soybean | nucleus | 46.38 | 37.21 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 47.55 | 36.65 |
| AT4G17880.1 | Thale cress | nucleus | 41.68 | 36.16 |
| KRH45440 | Soybean | nucleus | 46.18 | 36.09 |
| AT5G46760.1 | Thale cress | nucleus | 41.29 | 35.64 |
| KRH74418 | Soybean | nucleus | 43.84 | 34.89 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 10.96 | 34.15 |
| Solyc08g076930.1.1 | Tomato | nucleus | 45.6 | 33.82 |
| PGSC0003DMT400045204 | Potato | nucleus | 45.4 | 33.43 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 12.92 | 33.33 |
| TraesCSU01G222600.1 | Wheat | nucleus | 15.85 | 32.93 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 15.85 | 32.93 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 16.44 | 32.81 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 17.03 | 32.46 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 16.63 | 32.08 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 16.05 | 32.03 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 13.11 | 31.9 |
| Zm00001d031717_P001 | Maize | nucleus | 15.85 | 31.89 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 17.03 | 31.87 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 17.03 | 31.87 |
| Os09t0519100-00 | Rice | nucleus | 16.44 | 31.82 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 17.03 | 31.75 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 42.27 | 31.58 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 16.83 | 31.27 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 16.83 | 31.27 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 16.63 | 31.14 |
| KRH39540 | Soybean | nucleus | 44.42 | 31.05 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 42.07 | 31.02 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 16.83 | 30.82 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 41.88 | 30.79 |
| Os10t0575000-01 | Rice | nucleus | 42.07 | 30.76 |
| Zm00001d030028_P001 | Maize | nucleus | 42.07 | 30.5 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 16.63 | 30.47 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 16.63 | 30.47 |
| Zm00001d047017_P001 | Maize | nucleus | 41.88 | 30.44 |
| OQU80776 | Sorghum | nucleus | 15.66 | 30.42 |
| OQU75588 | Sorghum | nucleus | 15.66 | 30.42 |
| KXG39194 | Sorghum | nucleus | 41.88 | 30.27 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 16.63 | 30.25 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 15.07 | 30.08 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 16.24 | 30.07 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 40.7 | 30.01 |
| Zm00001d006150_P001 | Maize | nucleus | 17.03 | 29.9 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 16.24 | 29.75 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 13.89 | 29.71 |
| Zm00001d021164_P001 | Maize | nucleus | 16.83 | 29.66 |
| EER99201 | Sorghum | nucleus | 17.03 | 29.39 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 15.07 | 29.28 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 12.72 | 29.15 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 15.85 | 29.03 |
| OQU86344 | Sorghum | nucleus | 14.48 | 28.91 |
| KXG25462 | Sorghum | nucleus | 15.66 | 28.78 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 23.68 | 28.61 |
| OQU80778 | Sorghum | nucleus | 15.07 | 28.52 |
| Zm00001d052728_P001 | Maize | nucleus | 15.26 | 28.36 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 15.46 | 28.21 |
| OQU80777 | Sorghum | nucleus | 15.07 | 27.5 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 14.48 | 27.41 |
| AT4G16430.1 | Thale cress | nucleus | 23.09 | 25.27 |
| AT2G46510.1 | Thale cress | nucleus | 26.22 | 23.67 |
| AT1G01260.1 | Thale cress | nucleus | 27.01 | 23.39 |
| AT4G09820.1 | Thale cress | nucleus | 19.57 | 19.3 |
| AT4G37850.1 | Thale cress | nucleus | 10.76 | 16.77 |
| AT2G22750.3 | Thale cress | nucleus | 10.76 | 16.52 |
| AT2G22770.1 | Thale cress | nucleus | 10.18 | 16.25 |
| AT1G63650.1 | Thale cress | nucleus | 18.79 | 16.11 |
| AT4G00480.2 | Thale cress | nucleus | 17.42 | 15.34 |
| AT2G22760.1 | Thale cress | nucleus | 8.61 | 14.92 |
| AT5G41315.2 | Thale cress | nucleus | 17.61 | 13.95 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:834727 | EMBL:AB493781 | ProteinID:AED95431.1 | EMBL:AF252636 |
| ArrayExpress:AT5G46830 | EnsemblPlantsGene:AT5G46830 | RefSeq:AT5G46830 | TAIR:AT5G46830 | RefSeq:AT5G46830-TAIR-G | EnsemblPlants:AT5G46830.1 |
| TAIR:AT5G46830.1 | Symbol:ATNIG1 | ProteinID:BAA97217.1 | UniProt:C0SVS8 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009651 | GO:GO:0009987 | GO:GO:0042538 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | InterPro:MYC/MYB_N | RefSeq:NP_199495.1 | PFAM:PF00010 | PFAM:PF14215 | PO:PO:0000037 |
| PO:PO:0008019 | PO:PO:0009006 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | UniProt:Q9LUK7 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000009D3BF | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
Coordinates
chr5:+:19002564..19004384
Molecular Weight (calculated)
57351.3 Da
IEP (calculated)
6.015
GRAVY (calculated)
-0.475
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.