CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92157
EER97533
EER98873
EER98969
EES15016
OQU82468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	EER92157	AT1G19180.1	18547396
AT1G32640.1	EER97533	AT1G19180.1	18547396
AT1G32640.1	EER98969	AT1G19180.1	18547396
AT1G32640.1	EER98873	AT1G48500.1	19309455
AT1G32640.1	EES15016	AT1G48500.1	19309455
AT1G32640.1	EER98873	AT3G17860.1	17637675
AT1G32640.1	EES15016	AT3G17860.1	17637675
AT1G32640.1	OQU82468	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052728_P001	Maize	nucleus	88.85	89.82
OQU75588	Sorghum	nucleus	54.68	57.79
OQU80776	Sorghum	nucleus	54.68	57.79
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	54.68	54.48
OQU80778	Sorghum	nucleus	51.8	53.33
EER99201	Sorghum	nucleus	56.47	53.04
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	49.64	52.47
EER97058	Sorghum	cytosol, nucleus, plastid	50.72	51.09
OQU80777	Sorghum	nucleus	51.44	51.07
OQU86344	Sorghum	nucleus	46.4	50.39
Bra017527.1-P	Field mustard	nucleus	25.9	31.86
Bra013263.1-P	Field mustard	nucleus	24.82	25.46
Bra024992.1-P	Field mustard	nucleus	23.38	23.99
VIT_02s0025g02610.t01	Wine grape	nucleus	30.58	23.55
CDY70013	Canola	nucleus	19.78	21.83
KRH47834	Soybean	nucleus	34.89	20.91
AT4G00870.1	Thale cress	nucleus, plastid	31.65	20.8
KRH06400	Soybean	nucleus	34.53	20.6
PGSC0003DMT400014089	Potato	nucleus	28.42	20.57
Solyc10g009290.1.1	Tomato	nucleus	33.09	20.4
PGSC0003DMT400028057	Potato	nucleus	28.42	20.31
PGSC0003DMT400014097	Potato	nucleus	32.73	19.91
Solyc10g009270.2.1	Tomato	nucleus	27.7	19.59
Solyc01g096370.2.1	Tomato	nucleus	31.65	19.56
Solyc08g083170.1.1	Tomato	extracellular	26.98	19.38
VIT_15s0048g02820.t01	Wine grape	nucleus	34.53	19.32
PGSC0003DMT400047220	Potato	nucleus	31.3	19.25
PGSC0003DMT400031899	Potato	plastid	28.06	18.1
Bra017523.1-P	Field mustard	nucleus	30.22	16.57
Bra017520.1-P	Field mustard	nucleus	29.5	16.47
EES01345	Sorghum	nucleus	28.06	16.12
Bra024998.1-P	Field mustard	nucleus	33.45	16.03
AT5G46830.1	Thale cress	nucleus	28.78	15.66
AT5G46760.1	Thale cress	nucleus	32.73	15.37
Bra010178.1-P	Field mustard	nucleus	33.09	15.33
AT4G17880.1	Thale cress	nucleus	32.01	15.11
VIT_02s0012g01320.t01	Wine grape	nucleus	35.97	15.08
Solyc08g008600.2.1	Tomato	nucleus	24.46	15.04
PGSC0003DMT400015017	Potato	nucleus	24.46	14.91
PGSC0003DMT400002963	Potato	nucleus	32.01	14.88
EES10849	Sorghum	nucleus	18.35	14.78
AT1G32640.1	Thale cress	nucleus	33.09	14.77
KRH74418	Soybean	nucleus	33.81	14.64
KRH75613	Soybean	nucleus	33.45	14.6
KRH45440	Soybean	nucleus	34.17	14.53
KXG37671	Sorghum	nucleus	18.35	14.33
EER93685	Sorghum	mitochondrion	18.7	13.98
Solyc08g076930.1.1	Tomato	nucleus	34.53	13.93
KXG37866	Sorghum	nucleus	18.35	13.75
PGSC0003DMT400045204	Potato	nucleus	34.17	13.69
Solyc08g005050.2.1	Tomato	nucleus	22.3	13.36
KXG39194	Sorghum	nucleus	33.81	13.3
KXG39824	Sorghum	nucleus	15.47	13.19
KRH39540	Soybean	nucleus	34.53	13.13
Bra024993.1-P	Field mustard	nucleus	17.27	12.73
OQU77369	Sorghum	nucleus	19.06	12.62
OQU92034	Sorghum	nucleus	14.39	12.62
EER93684	Sorghum	nucleus	17.27	12.47
OQU75589	Sorghum	nucleus	17.27	12.47
EES19274	Sorghum	nucleus	26.26	12.44
KXG24110	Sorghum	nucleus	17.63	12.31
EER99993	Sorghum	nucleus	26.26	11.74
OQU92032	Sorghum	nucleus	14.03	11.47
OQU82117	Sorghum	nucleus	20.86	9.83
OQU82120	Sorghum	nucleus	19.78	9.35
OQU88697	Sorghum	nucleus	22.66	9.31
OQU82119	Sorghum	nucleus	17.99	9.16
OQU81560	Sorghum	nucleus	18.35	8.66
Bra013264.1-P	Field mustard	nucleus	6.83	6.4
CDY70012	Canola	nucleus	4.32	4.49

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6PIG0	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG25462
ProteinID:KXG25462	ProteinID:KXG25462.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF68
SMART:SM00353	EnsemblPlantsGene:SORBI_3007G182900	SUPFAM:SSF47459	UniParc:UPI00081ABA42	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:61594876..61595791

Molecular Weight (calculated)

29534.0 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.319

Length

278 amino acids

Sequence
(BLAST)

001: MQQQGAMNEL VPQSSFCSPA SPTSFFSAAA GHHSVLEFMS CGVPEQWLLG EEEALDNKHM HDGSEWVAGG SHDSAGSDLS SNPPVAAVVM SDRTARSRRG
101: RKPGPRSDNP GVSHVEAERQ RREKLNRRFC DLRATVPTVS RMDKASLLAD ATAYIAELRG RVEQLEADAK QQVAARKLGG GNPAMCPASG GLEEKLEVRM
201: VGRHAAAVRL TTASTRHAPA LLMGALRSLD LPVQNACVSR VGGAATVQDA VVDVPAALQD EGCLRAALLH VLQQDESA

Best Arabidopsis Sequence Match ( AT5G46760.1 )
(BLAST)

001: MNGTTSSINF LTSDDDASAA AMEAFIGTNH HSSLFPPPPQ QPPQPQFNED TLQQRLQALI ESAGENWTYA IFWQISHDFD SSTGDNTVIL GWGDGYYKGE
101: EDKEKKKNNT NTAEQEHRKR VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG SGALTGSGCE RAGQGQIYGL
201: KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
301: KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG MSKEGNNGKG CGSRAKERKS
501: SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY

Arabidopsis Description

MYC3Transcription factor MYC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.