Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU92032 | Sorghum | nucleus | 54.57 | 50.88 |
| Os10t0104300-00 | Rice | nucleus | 47.0 | 45.57 |
| KXG39824 | Sorghum | nucleus | 33.75 | 32.82 |
| KXG37671 | Sorghum | nucleus | 25.55 | 22.75 |
| EER93685 | Sorghum | mitochondrion | 23.03 | 19.62 |
| KXG37866 | Sorghum | nucleus | 22.71 | 19.41 |
| EES10849 | Sorghum | nucleus | 19.87 | 18.26 |
| KXG24110 | Sorghum | nucleus | 22.08 | 17.59 |
| EER93684 | Sorghum | nucleus | 19.87 | 16.36 |
| OQU80777 | Sorghum | nucleus | 14.2 | 16.07 |
| OQU77369 | Sorghum | nucleus | 21.14 | 15.95 |
| OQU75588 | Sorghum | nucleus | 12.93 | 15.59 |
| OQU80776 | Sorghum | nucleus | 12.93 | 15.59 |
| OQU86344 | Sorghum | nucleus | 12.3 | 15.23 |
| OQU75589 | Sorghum | nucleus | 17.67 | 14.55 |
| OQU80778 | Sorghum | nucleus | 12.3 | 14.44 |
| KXG25462 | Sorghum | nucleus | 12.62 | 14.39 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 11.99 | 13.62 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 10.73 | 12.32 |
| EER99201 | Sorghum | nucleus | 11.04 | 11.82 |
| OQU82119 | Sorghum | nucleus | 15.77 | 9.16 |
| EES01345 | Sorghum | nucleus | 13.88 | 9.09 |
| OQU82117 | Sorghum | nucleus | 16.4 | 8.81 |
| EES19274 | Sorghum | nucleus | 15.77 | 8.52 |
| OQU82120 | Sorghum | nucleus | 15.77 | 8.5 |
| OQU81560 | Sorghum | nucleus | 15.46 | 8.32 |
| OQU88697 | Sorghum | nucleus | 17.35 | 8.12 |
| EER99993 | Sorghum | nucleus | 14.51 | 7.4 |
| KXG39194 | Sorghum | nucleus | 16.4 | 7.36 |
Protein Annotations
| EnsemblPlants:OQU92034 | EnsemblPlantsGene:SORBI_3001G278500 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF35 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:OQU92034 | ProteinID:OQU92034.1 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000B425F1B | UniProt:A0A1Z5S7Y2 | MapMan:15.5.32 | : |
Description
hypothetical protein
Coordinates
chr1:-:54298021..54301842
Molecular Weight (calculated)
33864.8 Da
IEP (calculated)
5.402
GRAVY (calculated)
-0.435
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDSSANKQW LAELEKDDDL GELELIDPLS MQQLAESLAN ELWSQQQPPQ QEQRPTTTGF SFAGVGGSAA TGVGCNNILM SFTNDGGSSS SSSTTVVGTA
101: NNCCPPLTML PLTEKKQGTG SGGGRRASSS LKEHVVAERK RREKMHNQFA TLASIVPDIT KTDKVSVLGS TIEYVHHLKD RLKTLQQKKE HHHFAGSGSG
201: TAESESPPPS DAQCCTTGTG SKDDEAVNKS DDESPKIEVD VRGKTILLRV VCRQKKGVLI MVLTELIENH GLSIINTNVV PFAESSLNIT ITAQIEDGTS
301: STGELVNNIT SALNKVG
101: NNCCPPLTML PLTEKKQGTG SGGGRRASSS LKEHVVAERK RREKMHNQFA TLASIVPDIT KTDKVSVLGS TIEYVHHLKD RLKTLQQKKE HHHFAGSGSG
201: TAESESPPPS DAQCCTTGTG SKDDEAVNKS DDESPKIEVD VRGKTILLRV VCRQKKGVLI MVLTELIENH GLSIINTNVV PFAESSLNIT ITAQIEDGTS
301: STGELVNNIT SALNKVG
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.