CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99264
EES05725
EES14116
KXG31995
KXG33190
OQU88697

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	KXG31995	AT1G71030.1	15361138
AT4G09820.1	KXG33190	AT3G13540.1	15361138
AT4G09820.1	OQU88697	AT4G09820.1	18532977
AT4G09820.1	EER99264	AT4G38620.1	15361138
AT4G09820.1	EES14116	AT4G38620.1	15361138
AT4G09820.1	EES05725	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019170_P001	Maize	nucleus	72.67	73.0
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	50.22	54.31
TraesCS1B01G112900.1	Wheat	nucleus	47.56	51.03
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	38.26	50.88
TraesCS1B01G113100.4	Wheat	nucleus	50.37	49.56
GSMUA_Achr3P17620_001	Banana	nucleus	38.85	46.63
TraesCS1D01G094200.1	Wheat	nucleus	39.44	42.31
GSMUA_Achr6P21490_001	Banana	nucleus	40.03	41.63
KRH71432	Soybean	nucleus	39.44	40.89
AT4G09820.1	Thale cress	nucleus	31.17	40.73
KRH32008	Soybean	extracellular, plastid	39.14	39.91
VIT_07s0104g00090.t01	Wine grape	nucleus	40.92	39.8
CDX99505	Canola	nucleus	30.58	39.73
CDX86891	Canola	nucleus	30.43	39.54
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	32.2	38.11
PGSC0003DMT400033569	Potato	nucleus	33.09	37.97
Bra037887.1-P	Field mustard	nucleus	27.77	37.83
Solyc09g065100.1.1	Tomato	nucleus	37.52	37.35
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	31.61	36.39
OQU82117	Sorghum	nucleus	24.08	27.63
OQU81560	Sorghum	nucleus	23.49	26.99
OQU82120	Sorghum	nucleus	23.19	26.7
PGSC0003DMT400028054	Potato	cytosol	6.65	22.84
KXG25462	Sorghum	nucleus	9.31	22.66
OQU82119	Sorghum	nucleus	18.02	22.34
OQU86344	Sorghum	nucleus	8.42	22.27
PGSC0003DMT400028052	Potato	nucleus	6.65	22.17
EER99201	Sorghum	nucleus	8.86	20.27
OQU75588	Sorghum	nucleus	7.83	20.15
OQU80776	Sorghum	nucleus	7.83	20.15
OQU80777	Sorghum	nucleus	8.27	20.0
EER97058	Sorghum	cytosol, nucleus, plastid	7.98	19.57
EES01345	Sorghum	nucleus	13.88	19.42
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	7.98	19.35
KXG39824	Sorghum	nucleus	9.31	19.33
OQU80778	Sorghum	nucleus	7.68	19.26
OQU92034	Sorghum	nucleus	8.12	17.35
EER99993	Sorghum	nucleus	15.8	17.2
KXG37671	Sorghum	nucleus	8.86	16.85
KXG39194	Sorghum	nucleus	17.13	16.41
EES19274	Sorghum	nucleus	14.18	16.35
OQU92032	Sorghum	nucleus	7.83	15.59
KXG24110	Sorghum	nucleus	9.16	15.58
EES10849	Sorghum	nucleus	7.83	15.36
KXG37866	Sorghum	nucleus	8.12	14.82
EER93685	Sorghum	mitochondrion	7.83	14.25
EER93684	Sorghum	nucleus	7.68	13.51
OQU75589	Sorghum	nucleus	7.24	12.73
OQU77369	Sorghum	nucleus	7.68	12.38

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1W0W2U5	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N
EnsemblPlants:OQU88697	ProteinID:OQU88697	ProteinID:OQU88697.1	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353	EnsemblPlantsGene:SORBI_3002G076600	SUPFAM:SSF47459	UniParc:UPI0009DC89EA
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:7975937..7985221

Molecular Weight (calculated)

73745.6 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.449

Length

677 amino acids

Sequence
(BLAST)

001: MAAAGGEAVQ KALQSVAQST GWTYSLLWRL CPRQGALVWA EGHYNGAIRT RKTTQQQQQQ VVVVVPPPRR PTAALAPEDL TETEWFYLMC ASYCFPPAVG
101: LPGEAFVRRV HVWLYGANKV DSKVFSRAIL ARSAGIQTVA CIPVNDGVLE IGTTEKVEED IGLIQYARSI FMDQIGAHIM PTLSGHSTST APTTHINHQP
201: FQTKMGCIGD INVQKTSHNS GDEHHNEMED DGDVRIDLLQ TNTGNDSSRH SPQDTNVGNE QGTLNAGSSE LMLTGTSERV RDGCSKQEDE EIPVLMVCQN
301: NGNLVAQDEF GPWHDFVDED LSSKYLQSSA AEDQAVLAEN AHYVETVLAI LRFNASRQTQ AASSNTKAYL ALSKNSSFSR WTTSWNHKAS NNDLQSMLIP
401: DDEGAPQRLL KSILLGAPSS SSHPSYKGAD AAVHSSPEPR DDGEGTSRSR RAPPVQPAEL SASHVLKERR RREKLNERFV MLRSLVPFVT KMDRASILGD
501: TIEYVKQLRR RIQELESSRG RLVDSNPRTT AMAPPPPPPA ASTETTRRGH HTSGGYLARA GTGTGTGTAA EASASGSCCN SSVGEHEHHL AGDTEVQVSI
601: IGSDALLELR CPHREGLLLR VMQALHQELR LEVTSVQASS AGDVLLAELR AKVKEVHGRR SSITEVKRAI HLIVSSD

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.