Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71030.1 | OQU81560 | AT1G63650.1 | 15361138 |
| AT1G71030.1 | OQU82117 | AT1G63650.1 | 15361138 |
| AT1G71030.1 | OQU82119 | AT1G63650.1 | 15361138 |
| AT1G71030.1 | OQU82120 | AT1G63650.1 | 15361138 |
| AT1G71030.1 | OQU88697 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G046800.1 | Wheat | nucleus | 31.93 | 26.9 |
| TraesCS3D01G033100.1 | Wheat | mitochondrion, nucleus | 28.92 | 26.37 |
| HORVU3Hr1G004310.1 | Barley | nucleus | 27.71 | 25.0 |
| TraesCS3B01G036000.1 | Wheat | nucleus | 28.31 | 24.1 |
| Bra016164.1-P | Field mustard | nucleus | 28.31 | 23.98 |
| CDX96296 | Canola | nucleus | 28.31 | 23.98 |
| CDX72770 | Canola | nucleus | 27.71 | 23.47 |
| AT1G71030.1 | Thale cress | nucleus | 27.11 | 23.08 |
| Os01t0127450-00 | Rice | nucleus | 25.9 | 22.63 |
| Bra007957.1-P | Field mustard | nucleus | 25.9 | 22.51 |
| CDY03705 | Canola | nucleus | 25.9 | 21.94 |
Protein Annotations
| EnsemblPlants:KXG31995 | EnsemblPlantsGene:SORBI_3003G088300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF657 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:KXG31995 | ProteinID:KXG31995.1 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00081AD382 | UniProt:A0A1B6Q2B0 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr3:-:7666266..7667050
Molecular Weight (calculated)
18883.5 Da
IEP (calculated)
10.252
GRAVY (calculated)
-0.948
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVNRMKQRR WGLSGLQLGN SRPSSSQRPA NTAVGPLVRS KNNCFCEEEE DLLIKLHTLL GNRWSLIAGR LPGRTAKEVE SYWNRRMRSK LKCTGLDPEK
101: HRTTTFHLLP DDDQQWRRRR RPRNACKVGL PDAKAKHPDR PPPFNGKVEE EVVADDDCVS DAGSAC
101: HRTTTFHLLP DDDQQWRRRR RPRNACKVGL PDAKAKHPDR PPPFNGKVEE EVVADDDCVS DAGSAC
001: MNYLRPDLKR GNFTEEEDEL IIKLHSLLGN KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL SRGIDPNSHR LINESVVSPS SLQNDVVETI HLDFSGPVKP
101: EPVREEIGMV NNCESSGTTS EKDYGNEEDW VLNLELSVGP SYRYESTRKV SVVDSAESTR RWGSELFGAH ESDAVCLCCR IGLFRNESCR NCRVSDVRTH
101: EPVREEIGMV NNCESSGTTS EKDYGNEEDW VLNLELSVGP SYRYESTRKV SVVDSAESTR RWGSELFGAH ESDAVCLCCR IGLFRNESCR NCRVSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.