Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96296 | Canola | nucleus | 89.8 | 89.8 |
| AT1G71030.1 | Thale cress | nucleus | 73.47 | 73.85 |
| CDY03705 | Canola | nucleus | 72.96 | 72.96 |
| KXG31995 | Sorghum | nucleus | 23.47 | 27.71 |
| Os01t0127450-00 | Rice | nucleus | 25.51 | 26.32 |
| HORVU3Hr1G004310.1 | Barley | nucleus | 24.49 | 26.09 |
| TraesCS3D01G033100.1 | Wheat | mitochondrion, nucleus | 23.98 | 25.82 |
| TraesCS3A01G046800.1 | Wheat | nucleus | 25.0 | 24.87 |
| TraesCS3B01G036000.1 | Wheat | nucleus | 23.98 | 24.1 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | ProteinID:AFM91071.1 | EnsemblPlants:CDX72770 | ProteinID:CDX72770 | ProteinID:CDX72770.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00103149001 | InterPro:Homeobox-like_sf |
| GO:I6T5N5 | UniProt:I6T5N5 | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00026B651D |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g32180DBnaC06g32180D protein [Source:UniProtKB/TrEMBL;Acc:I6T5N5]
Coordinates
chrLK031797:-:153982..155250
Molecular Weight (calculated)
22321.6 Da
IEP (calculated)
10.104
GRAVY (calculated)
-0.703
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKISHGALS RPSGMLHRAK RYRGRKYAKP ELKQSNFSKD EDDLILKLHA LLGNRWSLIA GRLPGRTDNE VRIHWETYLE KKLMKMGIDP TNHRLYHHTN
101: YTSRRYINAS YKKHETDIIS DQSSSVSESC NMTLLPVSST KFSKDNATAG HNWLPDLNIG LVPMKTVTSL PVCSLQEPSE SSNHGSTSQE TLLLFR
101: YTSRRYINAS YKKHETDIIS DQSSSVSESC NMTLLPVSST KFSKDNATAG HNWLPDLNIG LVPMKTVTSL PVCSLQEPSE SSNHGSTSQE TLLLFR
001: MNKTRLRALS PPSGMQHRKR CRLRGRNYVR PEVKQRNFSK DEDDLILKLH ALLGNRWSLI AGRLPGRTDN EVRIHWETYL KRKLVKMGID PTNHRLHHHT
101: NYISRRHLHS SHKEHETKII SDQSSSVSES CGVTILPIPS TNCSEDSTST GRSHLPDLNI GLIPAVTSLP ALCLQDSSES STNGSTGQET LLLFR
101: NYISRRHLHS SHKEHETKII SDQSSSVSES CGVTILPIPS TNCSEDSTST GRSHLPDLNI GLIPAVTSLP ALCLQDSSES STNGSTGQET LLLFR
Arabidopsis Description
ATMYBL2At1g71030/F23N20_2 [Source:UniProtKB/TrEMBL;Acc:Q9C9A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.