CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72770
CDX80016
CDX80085
CDX80449
CDX83366
CDX86891
CDX90285
CDX95420
CDX95700
CDX96151
CDX96296
CDX99505
CDY03705
CDY05440
CDY07085
CDY12092
CDY23616
CDY24177
CDY27504
CDY42045
CDY49630
CDY52797
CDY53214
CDY55040
CDY58386
CDY59254
CDY70737
CDY72006
CDY72660

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	CDX96151	AT1G56650.1	15361138
AT4G09820.1	CDY49630	AT1G56650.1	15361138
AT4G09820.1	CDY53214	AT1G56650.1	15361138
AT4G09820.1	CDY55040	AT1G56650.1	15361138
AT4G09820.1	CDY58386	AT1G56650.1	15361138
AT4G09820.1	CDY70737	AT1G56650.1	15361138
AT4G09820.1	CDY72006	AT1G56650.1	15361138
AT4G09820.1	CDY72660	AT1G56650.1	15361138
AT4G09820.1	CDX96151	AT1G56650.1	18532977
AT4G09820.1	CDY49630	AT1G56650.1	18532977
AT4G09820.1	CDY53214	AT1G56650.1	18532977
AT4G09820.1	CDY55040	AT1G56650.1	18532977
AT4G09820.1	CDY58386	AT1G56650.1	18532977
AT4G09820.1	CDY70737	AT1G56650.1	18532977
AT4G09820.1	CDY72006	AT1G56650.1	18532977
AT4G09820.1	CDY72660	AT1G56650.1	18532977
AT4G09820.1	CDX96151	AT1G66370.1	15361138
AT4G09820.1	CDY49630	AT1G66370.1	15361138
AT4G09820.1	CDY53214	AT1G66370.1	15361138
AT4G09820.1	CDY55040	AT1G66370.1	15361138
AT4G09820.1	CDY58386	AT1G66370.1	15361138
AT4G09820.1	CDY70737	AT1G66370.1	15361138
AT4G09820.1	CDY72006	AT1G66370.1	15361138
AT4G09820.1	CDY72660	AT1G66370.1	15361138
AT4G09820.1	CDX96151	AT1G66380.1	15361138
AT4G09820.1	CDY49630	AT1G66380.1	15361138
AT4G09820.1	CDY53214	AT1G66380.1	15361138
AT4G09820.1	CDY55040	AT1G66380.1	15361138
AT4G09820.1	CDY58386	AT1G66380.1	15361138
AT4G09820.1	CDY70737	AT1G66380.1	15361138
AT4G09820.1	CDY72006	AT1G66380.1	15361138
AT4G09820.1	CDY72660	AT1G66380.1	15361138
AT4G09820.1	CDX96151	AT1G66390.1	15361138
AT4G09820.1	CDY49630	AT1G66390.1	15361138
AT4G09820.1	CDY53214	AT1G66390.1	15361138
AT4G09820.1	CDY55040	AT1G66390.1	15361138
AT4G09820.1	CDY58386	AT1G66390.1	15361138
AT4G09820.1	CDY70737	AT1G66390.1	15361138
AT4G09820.1	CDY72006	AT1G66390.1	15361138
AT4G09820.1	CDY72660	AT1G66390.1	15361138
AT4G09820.1	CDX72770	AT1G71030.1	15361138
AT4G09820.1	CDX96296	AT1G71030.1	15361138
AT4G09820.1	CDY03705	AT1G71030.1	15361138
AT4G09820.1	CDX80016	AT2G46410.1	15361138
AT4G09820.1	CDX83366	AT2G46410.1	15361138
AT4G09820.1	CDX95700	AT2G46410.1	15361138
AT4G09820.1	CDY42045	AT2G46410.1	15361138
AT4G09820.1	CDX80085	AT2G47190.1	18532977
AT4G09820.1	CDX95420	AT2G47190.1	18532977
AT4G09820.1	CDY27504	AT2G47190.1	18532977
AT4G09820.1	CDY07085	AT3G13540.1	15361138
AT4G09820.1	CDY23616	AT3G13540.1	15361138
AT4G09820.1	CDY24177	AT3G13540.1	15361138
AT4G09820.1	CDY59254	AT3G13540.1	15361138
AT4G09820.1	CDX86891	AT4G09820.1	18532977
AT4G09820.1	CDX99505	AT4G09820.1	18532977
AT4G09820.1	CDX90285	AT4G38620.1	15361138
AT4G09820.1	CDY12092	AT4G38620.1	15361138
AT4G09820.1	CDY52797	AT4G38620.1	15361138
AT4G09820.1	CDX80449	AT5G24520.1	15255866
AT4G09820.1	CDY05440	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86891	Canola	nucleus	98.27	98.27
Bra037887.1-P	Field mustard	nucleus	93.47	97.99
AT4G09820.1	Thale cress	nucleus	77.93	78.38
KRH71432	Soybean	nucleus	53.93	43.03
GSMUA_Achr3P17620_001	Banana	nucleus	46.26	42.73
CDY45357	Canola	cytosol, golgi, nucleus	15.55	42.63
KRH32008	Soybean	extracellular, plastid	53.55	42.02
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	46.07	41.96
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	46.64	41.33
VIT_07s0104g00090.t01	Wine grape	nucleus	55.09	41.24
PGSC0003DMT400033569	Potato	nucleus	42.42	37.46
Solyc09g065100.1.1	Tomato	nucleus	48.75	37.35
GSMUA_Achr6P21490_001	Banana	nucleus	46.45	37.17
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	42.03	34.98
TraesCS1B01G112900.1	Wheat	nucleus	40.12	33.12
TraesCS1B01G113100.4	Wheat	nucleus	42.8	32.41
OQU88697	Sorghum	nucleus	39.73	30.58
CDX77696	Canola	nucleus	6.91	30.0
Zm00001d019170_P001	Maize	nucleus	38.58	29.82
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	28.41	29.08
CDY39747	Canola	nucleus	30.71	28.62
TraesCS1D01G094200.1	Wheat	nucleus	34.36	28.37
CDY25513	Canola	nucleus	30.9	27.9
CDY58950	Canola	nucleus	30.13	27.21
CDY34367	Canola	nucleus	31.09	27.18
CDY70506	Canola	nucleus	27.06	26.4
CDY51155	Canola	mitochondrion, nucleus	27.45	26.38
CDX91907	Canola	nucleus	27.45	26.29
CDY08314	Canola	nucleus	30.33	26.12
CDY07214	Canola	mitochondrion, nucleus	27.06	26.01
CDX77694	Canola	nucleus	12.28	25.3
CDX77688	Canola	nucleus	20.92	24.11
PGSC0003DMT400028054	Potato	cytosol	9.02	23.86
CDY58502	Canola	nucleus	20.54	23.83
CDY72121	Canola	nucleus	13.82	23.38
PGSC0003DMT400028052	Potato	nucleus	9.02	23.15
CDY03185	Canola	nucleus	20.92	23.04
CDX73261	Canola	nucleus	19.19	22.57
CDY26910	Canola	nucleus	19.19	22.57
CDY59973	Canola	nucleus	21.88	22.4
CDY03183	Canola	nucleus	21.69	22.2
CDY32242	Canola	nucleus	18.62	21.51
CDY35183	Canola	nucleus	20.73	21.3
CDY34468	Canola	nucleus	18.43	21.29
CDX78808	Canola	nucleus	23.42	21.07
CDY03195	Canola	nucleus	21.88	20.92
CDY27319	Canola	nucleus	17.47	20.54
CDY44507	Canola	nucleus	23.03	20.48
CDY56874	Canola	nucleus	19.19	20.37
CDY35179	Canola	nucleus	21.88	20.28
CDX80023	Canola	nucleus	18.81	20.12
CDX90525	Canola	nucleus	17.47	19.96
CDY66312	Canola	nucleus	17.47	19.87
CDY70012	Canola	nucleus	10.17	19.85
CDX77699	Canola	nucleus	10.17	19.56
CDX93135	Canola	nucleus	9.98	19.48
CDX89627	Canola	nucleus	9.98	19.48
CDY33482	Canola	nucleus	9.98	19.19
CDX84081	Canola	nucleus	19.39	19.09
CDX90021	Canola	nucleus	19.58	18.89
CDY70013	Canola	nucleus	9.02	18.65
CDY09695	Canola	nucleus	16.89	18.07
CDY52593	Canola	nucleus	9.21	16.84
CDY13735	Canola	nucleus	9.21	16.61
CDX89512	Canola	nucleus	9.4	16.55
CDY52591	Canola	nucleus	9.98	16.51
CDY25629	Canola	nucleus	9.4	16.33
CDX89513	Canola	nucleus	9.98	16.0
CDY25630	Canola	nucleus	9.79	15.69
CDY13737	Canola	nucleus	8.83	15.59
CDX76899	Canola	nucleus	9.6	15.48
CDX69336	Canola	nucleus	9.79	15.09
CDY72199	Canola	nucleus	9.6	14.97
CDY49678	Canola	nucleus	9.6	14.97
CDX89511	Canola	nucleus	9.21	14.95
CDX75679	Canola	nucleus	9.6	14.88
CDY25628	Canola	nucleus	8.83	14.29

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:ADV03942.1	EnsemblPlants:CDX99505	ProteinID:CDX99505	ProteinID:CDX99505.1
GO:G8Z8Z2	UniProt:G8Z8Z2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00107888001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000243C521	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

BnaC09g24870DBHLH DNA binding domain transcription factor BnaC.TT8 [Source:UniProtKB/TrEMBL;Acc:G8Z8Z2]

Coordinates

chrLK031911:+:105605..108402

Molecular Weight (calculated)

59836.1 Da

IEP (calculated)

5.517

GRAVY (calculated)

-0.498

Length

521 amino acids

Sequence
(BLAST)

001: MDELSIIPLW KVIGAEKEEI QGLLKAVVQS VGWTYSVFWQ LCPQRRKLLW SSGNYNGAIK TRKTTQPAEV TAEEAASERS QQLMELYETL FAGESSMEAR
101: ACTALSPEDL TDPEWFYVLC FTYSFEPPSG MPGKAYARRK HIWLSGANEV DNKIFSRAIS AKSAKIQTVV CIPVLDGVLE LGTTNKVKES EEFVDHIKSF
201: FHNYPKSNTK PTLSEHFINE EREEDEDEVE EEEMTMSEEI RLGSPDDDDV SNQNLLSDFH IEATNSLDTH MDMMNLMEEG GNYSQTVSTL LMSQPTSLLS
301: DSVSTSSYVQ SSFISWRVEN VKEHQQYQRV EKAASSSSQW MLKHIILKVP FLHDNTKNKR LPREELNHVV AERRRREKLN ERFITLRSLV PFVTKMDKVS
401: ILGDTIEYVN HLSKRIHELE STHHEPNQKR MRIGKGRTWE EVEVSIIESD VLLEMRCEYR DGLLLNILQV LKELGIETTA VHTALNDHHF EAEIRAKVRG
501: KKPTIAEVKI AIHQIIYNNK L

Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)

001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL

Arabidopsis Description

TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.