CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017523.1-P	Field mustard	nucleus	97.83	97.83
CDY03185	Canola	nucleus	88.56	94.93
CDY59973	Canola	nucleus	81.07	80.75
CDY03183	Canola	nucleus	79.68	79.37
CDX77694	Canola	nucleus	28.4	56.92
CDY33482	Canola	nucleus	29.98	56.09
CDX77699	Canola	nucleus	29.98	56.09
CDX77696	Canola	nucleus	12.62	53.33
CDX73261	Canola	nucleus	43.98	50.34
CDY26910	Canola	nucleus	43.59	49.89
CDY58502	Canola	nucleus	41.81	47.22
CDX77688	Canola	nucleus	41.81	46.9
CDX84081	Canola	nucleus	44.77	42.91
CDY03195	Canola	nucleus	42.21	39.27
Solyc08g005050.2.1	Tomato	nucleus	35.7	39.01
KRH75613	Soybean	nucleus	47.73	37.99
CDY35179	Canola	nucleus	41.81	37.72
VIT_02s0012g01320.t01	Wine grape	nucleus	49.11	37.56
PGSC0003DMT400002963	Potato	nucleus	43.79	37.12
KRH74418	Soybean	nucleus	46.94	37.07
CDX78808	Canola	nucleus	41.81	36.61
KRH45440	Soybean	nucleus	47.14	36.54
CDY44507	Canola	nucleus	42.21	36.52
Solyc08g076930.1.1	Tomato	nucleus	47.14	34.69
PGSC0003DMT400045204	Potato	nucleus	47.14	34.44
KRH39540	Soybean	nucleus	47.34	32.83
CDY27319	Canola	nucleus	26.04	29.8
CDY70013	Canola	nucleus	14.79	29.76
CDY66312	Canola	nucleus	25.84	28.6
CDX80023	Canola	nucleus	26.43	27.52
CDY56874	Canola	nucleus	26.04	26.88
CDY45357	Canola	cytosol, golgi, nucleus	9.86	26.32
CDX90021	Canola	nucleus	27.22	25.56
CDY34468	Canola	nucleus	22.68	25.5
CDY32242	Canola	nucleus	22.49	25.28
CDX90525	Canola	nucleus	22.49	25.0
CDY70012	Canola	nucleus	11.83	22.47
CDY09695	Canola	nucleus	20.91	21.77
CDX99505	Canola	nucleus	21.3	20.73
CDX86891	Canola	nucleus	21.3	20.73
CDX93135	Canola	nucleus	10.65	20.22
CDX89627	Canola	nucleus	10.65	20.22
CDY13737	Canola	nucleus	11.24	19.32
CDX76899	Canola	nucleus	11.83	18.58
CDX75679	Canola	nucleus	12.23	18.45
CDX69336	Canola	nucleus	12.23	18.34
CDY25628	Canola	nucleus	11.64	18.32
CDY49678	Canola	nucleus	12.03	18.26
CDX89511	Canola	nucleus	11.44	18.07
CDY25513	Canola	nucleus	20.51	18.02
CDY72199	Canola	nucleus	11.83	17.96
CDY39747	Canola	nucleus	19.33	17.53
CDY70506	Canola	nucleus	18.34	17.42
CDY34367	Canola	nucleus	20.12	17.11
CDX91907	Canola	nucleus	18.34	17.1
CDY58950	Canola	nucleus	19.13	16.81
CDY08314	Canola	nucleus	19.33	16.2
CDY07214	Canola	mitochondrion, nucleus	16.96	15.87
CDY52593	Canola	nucleus	8.88	15.79
CDY51155	Canola	mitochondrion, nucleus	16.77	15.68
CDX89512	Canola	nucleus	9.07	15.54
CDY25629	Canola	nucleus	9.07	15.33
CDY13735	Canola	nucleus	8.68	15.22
CDY72121	Canola	nucleus	9.07	14.94
CDY52591	Canola	nucleus	8.88	14.29
CDX89513	Canola	nucleus	9.07	14.15
CDY25630	Canola	nucleus	8.68	13.54

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078HEF5	UniProt:A0A078HEF5	EnsemblPlants:CDY35183	ProteinID:CDY35183
ProteinID:CDY35183.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00058083001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0004EDB6E3	InterPro:bHLH_dom	:	:	:	:

Description

BnaA09g18200DBnaA09g18200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEF5]

Coordinates

chrLK032347:+:382291..383944

Molecular Weight (calculated)

56195.3 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.495

Length

507 amino acids

Sequence
(BLAST)

001: MDSLNTNVPA SMIDALMSSP SSGFWPPQSP ANPSPDSALQ KRLQAVLNGT HEAWTYAIFW TPSYYDYSGE SVLKWGDGIY KGEEADNTRR KRRRMTVAER
101: EHWSIILPEL SSMISDENVS VIEGEDDVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDHI LASGCDRAKK GGDSGLQTIV CIPLDNGVLE
201: LGSTVEIQQN PDLFNKIRVV FSFEGSRDFS GDPNSNSFQP FSTHLENGGG SSTVTVNANL YPNPVYPQTV NYAISPLERA LHSPNRNYPH QIPIDNGELL
301: HSAGDIDGSD HSDIEATVVP GNKQKKKRGR KLANGRKEPL NHVQAERLRR EKLNQRFYAL RATVPNVSKM DKASLLGDAI SYIKELKSRA ENAESERNAI
401: QIQLNKLKEE MAGRNVVCRG GENASEIETA NIDVKILGCD AMVRLESSKR NHPAARLMNA FMDLDVELNH ASISVIHDLM IQQATVKMGS RMYTQDQLRA
501: MLVSKIN

Best Arabidopsis Sequence Match ( AT5G46830.1 )
(BLAST)

001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S

Arabidopsis Description

BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.