Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038458.1-P | Field mustard | nucleus | 99.78 | 99.78 |
| CDY34468 | Canola | nucleus | 98.23 | 98.23 |
| CDX90525 | Canola | nucleus | 88.25 | 87.28 |
| AT4G16430.1 | Thale cress | nucleus | 90.02 | 86.94 |
| CDY09695 | Canola | nucleus | 84.04 | 77.82 |
| VIT_07s0141g01060.t01 | Wine grape | nucleus | 54.99 | 50.51 |
| PGSC0003DMT400051672 | Potato | nucleus | 51.0 | 48.22 |
| Solyc06g083980.1.1 | Tomato | nucleus | 50.33 | 47.59 |
| KRH19522 | Soybean | nucleus | 50.55 | 45.06 |
| KRH32144 | Soybean | nucleus | 49.22 | 44.05 |
| CDX77696 | Canola | nucleus | 9.98 | 37.5 |
| CDY66312 | Canola | nucleus | 37.47 | 36.9 |
| CDY27319 | Canola | nucleus | 36.14 | 36.79 |
| CDX80023 | Canola | nucleus | 37.25 | 34.5 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 33.7 | 34.31 |
| CDY56874 | Canola | nucleus | 37.25 | 34.22 |
| Os01t0705700-01 | Rice | nucleus | 34.81 | 34.13 |
| CDY70013 | Canola | nucleus | 18.63 | 33.33 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 33.48 | 32.9 |
| Zm00001d043706_P001 | Maize | nucleus | 33.7 | 32.55 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 33.48 | 32.47 |
| HORVU3Hr1G066390.1 | Barley | nucleus | 33.48 | 32.47 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 33.26 | 31.58 |
| EES01345 | Sorghum | nucleus | 33.48 | 31.2 |
| CDX90021 | Canola | nucleus | 37.03 | 30.93 |
| CDY70012 | Canola | nucleus | 18.18 | 30.71 |
| CDY58502 | Canola | nucleus | 27.27 | 27.39 |
| CDX77688 | Canola | nucleus | 27.05 | 26.99 |
| CDY33482 | Canola | nucleus | 15.52 | 25.83 |
| CDX77699 | Canola | nucleus | 15.3 | 25.46 |
| CDX73261 | Canola | nucleus | 24.61 | 25.06 |
| CDY26910 | Canola | nucleus | 24.61 | 25.06 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 10.2 | 24.21 |
| CDY03185 | Canola | nucleus | 25.28 | 24.1 |
| CDX77694 | Canola | nucleus | 13.3 | 23.72 |
| CDY03195 | Canola | nucleus | 28.6 | 23.67 |
| CDX84081 | Canola | nucleus | 27.72 | 23.63 |
| CDY03183 | Canola | nucleus | 26.61 | 23.58 |
| CDY59973 | Canola | nucleus | 26.39 | 23.38 |
| CDY44507 | Canola | nucleus | 29.93 | 23.04 |
| CDY35179 | Canola | nucleus | 28.6 | 22.95 |
| CDX78808 | Canola | nucleus | 29.05 | 22.63 |
| CDY35183 | Canola | nucleus | 25.28 | 22.49 |
| CDX86891 | Canola | nucleus | 21.73 | 18.81 |
| CDX99505 | Canola | nucleus | 21.51 | 18.62 |
| CDX93135 | Canola | nucleus | 10.42 | 17.6 |
| CDX89627 | Canola | nucleus | 10.42 | 17.6 |
| CDY25513 | Canola | nucleus | 20.4 | 15.94 |
| CDY13737 | Canola | nucleus | 10.42 | 15.93 |
| CDX76899 | Canola | nucleus | 11.31 | 15.79 |
| CDY39747 | Canola | nucleus | 19.51 | 15.74 |
| CDY08314 | Canola | nucleus | 21.06 | 15.7 |
| CDY34367 | Canola | nucleus | 20.62 | 15.6 |
| CDY49678 | Canola | nucleus | 11.53 | 15.57 |
| CDY72199 | Canola | nucleus | 11.53 | 15.57 |
| CDY58950 | Canola | nucleus | 19.73 | 15.42 |
| CDY25628 | Canola | nucleus | 10.86 | 15.22 |
| CDX89512 | Canola | nucleus | 9.98 | 15.2 |
| CDY51155 | Canola | mitochondrion, nucleus | 18.18 | 15.13 |
| CDX89513 | Canola | nucleus | 10.86 | 15.08 |
| CDY25629 | Canola | nucleus | 9.98 | 15.0 |
| CDX89511 | Canola | nucleus | 10.64 | 14.95 |
| CDY07214 | Canola | mitochondrion, nucleus | 17.96 | 14.94 |
| CDY52591 | Canola | nucleus | 10.42 | 14.92 |
| CDX91907 | Canola | nucleus | 17.96 | 14.89 |
| CDX69336 | Canola | nucleus | 11.09 | 14.79 |
| CDY25630 | Canola | nucleus | 10.64 | 14.77 |
| CDX75679 | Canola | nucleus | 10.86 | 14.58 |
| CDY13735 | Canola | nucleus | 9.31 | 14.53 |
| CDY52593 | Canola | nucleus | 9.09 | 14.39 |
| CDY70506 | Canola | nucleus | 16.85 | 14.23 |
| CDY72121 | Canola | nucleus | 8.87 | 12.99 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078H403 | UniProt:A0A078H403 | EnsemblPlants:CDY32242 | ProteinID:CDY32242 |
| ProteinID:CDY32242.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00051682001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 |
| PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF53 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0001B64154 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BnaA01g17420DBnaA01g17420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H403]
Coordinates
chrLK032290:+:220779..222449
Molecular Weight (calculated)
50257.6 Da
IEP (calculated)
7.128
GRAVY (calculated)
-0.443
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQKFWDNQE DRAMVESTIG SEACDFFISS ASSLTKLLPP PPTDPNLQQG LRHVVEGSDW DYAIFWLASN VNSSDGCVLI WGDGHCRVVK GNSGDEQDET
101: KRRVLSKLHL SFVGSDLVKQ GPLTDLDMFY LASLYFSFRC DSNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FKTVLSVPVN CGVVELGSLK
201: LIPEDKSVVE MVKSVFGGSD FVKTKEAPKI FGRQLSLGGS KPRSMSINFS PKVEDDSGFS LEAYEVGGSN QVYGKDEAAL YLTDEQRPRK RGRKPANGRE
301: EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLA DAITYITDMQ KKIRVYETEK QVMKRRESNQ ITPAEVDYQQ RQDDAVVRVS CPLENHPVSK
401: VIQVFKENEV TPHDANVAVT EEGVVHTFTL RPQGGCTAEQ LKDKLLTSLA Q
101: KRRVLSKLHL SFVGSDLVKQ GPLTDLDMFY LASLYFSFRC DSNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FKTVLSVPVN CGVVELGSLK
201: LIPEDKSVVE MVKSVFGGSD FVKTKEAPKI FGRQLSLGGS KPRSMSINFS PKVEDDSGFS LEAYEVGGSN QVYGKDEAAL YLTDEQRPRK RGRKPANGRE
301: EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLA DAITYITDMQ KKIRVYETEK QVMKRRESNQ ITPAEVDYQQ RQDDAVVRVS CPLENHPVSK
401: VIQVFKENEV TPHDANVAVT EEGVVHTFTL RPQGGCTAEQ LKDKLLTSLA Q
001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
Arabidopsis Description
BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.