Factsheet for TraesCS3D01G253700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G252900.1	Wheat	nucleus	95.27	96.51
TraesCS3B01G288700.1	Wheat	nucleus	89.89	94.36
TraesCS3B01G284800.1	Wheat	nucleus	95.48	93.47
HORVU3Hr1G066390.1	Barley	nucleus	89.68	89.68
Os01t0705700-01	Rice	nucleus	74.41	75.22
Zm00001d043706_P001	Maize	nucleus	71.83	71.52
EES01345	Sorghum	nucleus	74.19	71.28
VIT_07s0141g01060.t01	Wine grape	nucleus	36.13	34.22
TraesCS4D01G275500.1	Wheat	nucleus	43.23	33.61
CDY32242	Canola	nucleus	32.47	33.48
Bra038458.1-P	Field mustard	nucleus	32.47	33.48
CDY34468	Canola	nucleus	32.26	33.26
AT4G16430.1	Thale cress	nucleus	33.33	33.19
Bra012720.1-P	Field mustard	nucleus	31.83	32.46
CDX90525	Canola	nucleus	31.83	32.46
TraesCS3D01G166300.2	Wheat	nucleus	42.8	31.84
PGSC0003DMT400051672	Potato	nucleus	32.47	31.66
KRH19522	Soybean	nucleus	34.41	31.62
Solyc06g083980.1.1	Tomato	nucleus	32.26	31.45
KRH32144	Soybean	nucleus	33.76	31.15
CDY09695	Canola	nucleus	29.89	28.54
TraesCS5D01G313500.1	Wheat	nucleus	16.34	27.24
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	11.4	26.5
TraesCS5D01G313700.1	Wheat	nucleus	15.48	26.18
TraesCS5D01G313600.1	Wheat	nucleus	15.7	26.16
TraesCS5D01G313400.1	Wheat	nucleus	15.27	26.01
TraesCS1D01G374800.1	Wheat	nucleus	14.62	25.66
TraesCS7D01G102200.1	Wheat	nucleus	13.33	24.22
TraesCS1D01G196900.1	Wheat	nucleus	34.19	22.88
TraesCS4D01G306400.1	Wheat	nucleus	7.74	21.82
TraesCS2D01G406900.1	Wheat	nucleus	23.01	18.87
TraesCS2D01G575600.3	Wheat	nucleus, plastid	22.8	18.0
TraesCS2D01G406800.1	Wheat	plastid	17.63	17.63
TraesCS4D01G235900.1	Wheat	nucleus	12.04	17.39
TraesCS4D01G224600.1	Wheat	nucleus	20.22	16.88
TraesCS4D01G330500.1	Wheat	nucleus	11.4	16.77
TraesCS4D01G306300.1	Wheat	nucleus	11.61	15.84
TraesCS5D01G517900.1	Wheat	nucleus	10.75	15.43
TraesCS4D01G019100.1	Wheat	nucleus	12.04	15.38
TraesCS4D01G018800.2	Wheat	nucleus	11.83	15.19
TraesCS4D01G019200.1	Wheat	nucleus	11.4	14.72
TraesCS3D01G014900.1	Wheat	nucleus	10.32	14.29
TraesCS5D01G020600.1	Wheat	nucleus	10.97	13.64
TraesCS4D01G056900.2	Wheat	nucleus	10.97	13.6
TraesCS4D01G018700.1	Wheat	nucleus	10.32	13.3
TraesCS1D01G094200.1	Wheat	nucleus	15.7	11.57

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0008152	GO:GO:0010629
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF59	SMART:SM00353	SUPFAM:SSF47459
EnsemblPlantsGene:TraesCS3D01G253700	EnsemblPlants:TraesCS3D01G253700.1	InterPro:bHLH_dom	TIGR:cd00083	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:355318384..355320162

Molecular Weight (calculated)

49819.2 Da

IEP (calculated)

8.944

GRAVY (calculated)

-0.337

Length

465 amino acids

Sequence
(BLAST)

001: MSWSDTDAAL FAAVLGHDAA RHLATTPPHL DGPASSSPEL QARLYDLVER GGAWTYGIYW QESRAGAVLG WGDGHCRDGP AEQAGAADRS LARKRALLRL
101: HALYGGGDED GADYALRLDR VTGVEMYFLA SMYFSFREDA GGPGRALTSG HHAWAAVDPH LPGSPGWYVR ASLAQSAGLR TVVFLPCKGG VLELGSAVAM
201: RENPEVLRAI QSVFHVEAVA PDDRMRIFGK DVSRSPPLPP VQTTGSDASW ALRLGGQAMV ARPTKQEAAA VKPKPQQEPP KSISFSDAQK QAGGEERRPR
301: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPK ISKMDKASLL SDAIAYIQEL EERLRGGAAG PAPARAEAGP SVEVKAMQDE VVLRVSTPLD
401: AHPISGALSA MRDSQLSVVA SSMAVADDTV THKLVVRSAG PERLTAETVL AAISRGVMMS ATPSP

Best Arabidopsis Sequence Match ( AT4G16430.1 )
(BLAST)

001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ

Arabidopsis Description

BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.