Factsheet for TraesCS4D01G330500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G505100.1	Wheat	nucleus	83.86	88.63
TraesCS4D01G235900.1	Wheat	nucleus	82.28	80.75
KXG39824	Sorghum	nucleus	60.13	58.28
Zm00001d028312_P001	Maize	nucleus	54.75	54.06
Os03t0229100-00	Rice	plastid	48.73	53.85
HORVU4Hr1G065640.6	Barley	nucleus	51.58	47.8
TraesCS5D01G517900.1	Wheat	nucleus	26.27	25.62
TraesCS4D01G056900.2	Wheat	nucleus	29.75	25.07
TraesCS3D01G014900.1	Wheat	nucleus	25.95	24.4
TraesCS4D01G019100.1	Wheat	nucleus	26.58	23.08
TraesCS4D01G019200.1	Wheat	nucleus	25.95	22.78
TraesCS4D01G018700.1	Wheat	nucleus	25.95	22.71
TraesCS4D01G018800.2	Wheat	nucleus	25.95	22.65
TraesCS4D01G306300.1	Wheat	nucleus	24.37	22.58
TraesCS4D01G306400.1	Wheat	nucleus	11.71	22.42
TraesCS5D01G020600.1	Wheat	nucleus	25.95	21.93
TraesCS7D01G102200.1	Wheat	nucleus	14.24	17.58
TraesCS1D01G374800.1	Wheat	nucleus	14.56	17.36
TraesCS5D01G313400.1	Wheat	nucleus	14.87	17.22
TraesCS5D01G313700.1	Wheat	nucleus	14.56	16.73
TraesCS5D01G313600.1	Wheat	nucleus	14.24	16.13
TraesCS5D01G313500.1	Wheat	nucleus	14.24	16.13
TraesCS3D01G253700.1	Wheat	nucleus	16.77	11.4
TraesCS2D01G406900.1	Wheat	nucleus	17.72	9.88
TraesCS1D01G196900.1	Wheat	nucleus	20.89	9.5
TraesCS1D01G094200.1	Wheat	nucleus	18.35	9.19
TraesCS2D01G575600.3	Wheat	nucleus, plastid	17.09	9.17
TraesCS4D01G224600.1	Wheat	nucleus	16.14	9.16
TraesCS2D01G406800.1	Wheat	plastid	13.29	9.03
TraesCS3D01G166300.2	Wheat	nucleus	16.46	8.32
TraesCS4D01G275500.1	Wheat	nucleus	15.19	8.03
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	4.11	6.5

Protein Annotations

EnsemblPlants:TraesCS4D01G330500.1	EnsemblPlantsGene:TraesCS4D01G330500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR31945
PANTHER:PTHR31945:SF11	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:25.4.1.7	:	:	:

Description

No Description!

Coordinates

chr4D:-:488664941..488666259

Molecular Weight (calculated)

34386.9 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.456

Length

316 amino acids

Sequence
(BLAST)

001: MEQPKQWLTQ TEQEELAYMY QQEGGPVPVP GREQQFAEPP LPGREAQCYT PPMAIPMFSP SRSSNFPSFG GSSSLPNLPF GSATVKNELG QPSPPPSSNF
101: LSFGPGQAST LNFSGWQRDG VQGTMQQLQA PERRGRAPQE HVIAERKRRE KLQQQFVSLA TIVPGLKKTD KLSLLGSTID YVKQLEEKVK ALEQGSRRPS
201: ESMVFDSKCC ISAPNNDAAG PSGSGSGSGY SSPDIEASIK GNTALLNICC NERRGVLVMI MSELENQGLS IINTNVIPFT DSCLNITTTA KIEEGVLSAV
301: ELVKNLKMAL RSFSWK

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.