Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G021500.1 | Wheat | nucleus | 89.72 | 90.48 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 91.67 | 89.67 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 87.78 | 87.53 |
| HORVU4Hr1G003210.1 | Barley | nucleus | 87.5 | 86.3 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 87.78 | 85.41 |
| Zm00001d038966_P001 | Maize | plastid | 32.78 | 57.84 |
| Zm00001d026009_P001 | Maize | plastid | 32.22 | 56.86 |
| KXG37866 | Sorghum | nucleus | 53.89 | 52.29 |
| EES10849 | Sorghum | nucleus | 50.0 | 52.17 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 23.89 | 52.12 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 47.5 | 50.15 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 46.11 | 49.4 |
| Zm00001d003604_P001 | Maize | nucleus | 45.56 | 48.81 |
| Zm00001d033413_P001 | Maize | nucleus | 42.5 | 48.11 |
| Zm00001d025462_P001 | Maize | nucleus | 43.89 | 47.88 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 47.5 | 47.24 |
| EER93685 | Sorghum | mitochondrion | 48.61 | 47.04 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 47.5 | 46.98 |
| Zm00001d033412_P001 | Maize | nucleus | 47.5 | 46.34 |
| TraesCS5D01G517900.1 | Wheat | nucleus | 41.39 | 45.99 |
| Zm00001d024781_P001 | Maize | nucleus | 41.94 | 42.78 |
| TraesCS5D01G020600.1 | Wheat | nucleus | 43.61 | 41.98 |
| OQU75589 | Sorghum | nucleus | 41.67 | 38.96 |
| OQU77369 | Sorghum | nucleus | 45.28 | 38.81 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 28.33 | 27.2 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 23.61 | 26.4 |
| TraesCS4D01G330500.1 | Wheat | nucleus | 22.78 | 25.95 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 15.0 | 19.35 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 13.61 | 19.14 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 14.44 | 18.64 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 13.89 | 18.18 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 13.33 | 18.11 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 13.61 | 17.95 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 14.72 | 11.4 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 16.67 | 10.03 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 18.89 | 9.78 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 15.0 | 9.52 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 14.44 | 9.34 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 15.83 | 9.12 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 14.72 | 9.0 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 14.72 | 8.4 |
| TraesCS2D01G406800.1 | Wheat | plastid | 10.83 | 8.39 |
| TraesCS1D01G094000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 3.33 | 6.0 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G019200.1 | EnsemblPlantsGene:TraesCS4D01G019200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr4D:-:8149046..8151425
Molecular Weight (calculated)
38279.3 Da
IEP (calculated)
5.780
GRAVY (calculated)
-0.262
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSALFMEW AMDTLEQEHP DPVVVVNGDS GDAAFPSLQA LREQHLVFEE LITGANPASS GSSGETTEGS GGYGGNFPSP AAMEHHVWPP SPNSARCAPK
101: LCRNGGGTSL PVMSWNFCAL PASDATLDSG SAGPVVPETV YGGSQPTRRA AARSPTGTGP VSSGPPYAQD HIMAERKRRE KINQRFIELS TVIPGLKKMD
201: KATILSDATR HVKELQEKIK ALEAATGRSS RSIETVVLVK KKPRHADAAL SDQNGSPSSG SSSTGNPLPE IEVRFSETGV MVRILCHDVK GVVVRVLSEV
301: EEGLHLTVTH ANVMPITACT VIITITAKVD EGFTVTAEEI IGRLNYVLEL HSSCTSTEQK
101: LCRNGGGTSL PVMSWNFCAL PASDATLDSG SAGPVVPETV YGGSQPTRRA AARSPTGTGP VSSGPPYAQD HIMAERKRRE KINQRFIELS TVIPGLKKMD
201: KATILSDATR HVKELQEKIK ALEAATGRSS RSIETVVLVK KKPRHADAAL SDQNGSPSSG SSSTGNPLPE IEVRFSETGV MVRILCHDVK GVVVRVLSEV
301: EEGLHLTVTH ANVMPITACT VIITITAKVD EGFTVTAEEI IGRLNYVLEL HSSCTSTEQK
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.