Factsheet for TraesCS5D01G020600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G002090.11	Barley	nucleus	89.84	87.96
TraesCS5A01G014800.1	Wheat	nucleus	92.25	87.79
TraesCS5B01G013000.2	Wheat	nucleus	87.7	86.77
Os12t0632600-00	Rice	nucleus	52.41	55.68
Zm00001d031167_P002	Maize	nucleus	56.68	53.94
KXG24110	Sorghum	nucleus	56.15	52.76
TraesCS4D01G306400.1	Wheat	nucleus	21.39	48.48
TraesCS4D01G019200.1	Wheat	nucleus	41.98	43.61
TraesCS4D01G306300.1	Wheat	nucleus	39.3	43.11
TraesCS5D01G517900.1	Wheat	nucleus	37.17	42.9
TraesCS4D01G018700.1	Wheat	nucleus	40.64	42.11
TraesCS4D01G018800.2	Wheat	nucleus	39.57	40.88
TraesCS4D01G019100.1	Wheat	nucleus	38.77	39.84
TraesCS3D01G014900.1	Wheat	nucleus	35.03	38.99
TraesCS4D01G056900.2	Wheat	nucleus	27.27	27.2
TraesCS4D01G235900.1	Wheat	nucleus	22.73	26.4
TraesCS4D01G330500.1	Wheat	nucleus	21.93	25.95
TraesCS1D01G374800.1	Wheat	nucleus	12.57	17.74
TraesCS5D01G313400.1	Wheat	nucleus	12.57	17.22
TraesCS7D01G102200.1	Wheat	nucleus	11.5	16.8
TraesCS5D01G313600.1	Wheat	nucleus	12.3	16.49
TraesCS5D01G313500.1	Wheat	nucleus	12.03	16.13
TraesCS5D01G313700.1	Wheat	nucleus	11.76	16.0
TraesCS3D01G253700.1	Wheat	nucleus	13.64	10.97
TraesCS2D01G406900.1	Wheat	nucleus	15.24	10.05
TraesCS4D01G275500.1	Wheat	nucleus	16.04	10.03
TraesCS4D01G224600.1	Wheat	nucleus	14.17	9.52
TraesCS1D01G196900.1	Wheat	nucleus	17.11	9.21
TraesCS3D01G166300.2	Wheat	nucleus	15.24	9.12
TraesCS2D01G575600.3	Wheat	nucleus, plastid	14.17	9.0
TraesCS2D01G406800.1	Wheat	plastid	10.96	8.82
TraesCS1D01G094200.1	Wheat	nucleus	14.17	8.4
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	2.94	5.5

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	InterPro:ACT_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PFscan:PS51671	PANTHER:PTHR23042	PANTHER:PTHR23042:SF74	SMART:SM00353
SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS5D01G020600	EnsemblPlants:TraesCS5D01G020600.1	InterPro:bHLH_dom	TIGR:cd00083	SEG:seg

Description

No Description!

Coordinates

chr5D:-:13313989..13318056

Molecular Weight (calculated)

39711.0 Da

IEP (calculated)

6.357

GRAVY (calculated)

-0.497

Length

374 amino acids

Sequence
(BLAST)

001: MDDFMQWAMN TLDQQQYHAA SAAAAPPVYG GAGSSSGGSS AGAAFPSLQA LRESTAAGGG VRDLRVQVDH YQPSSWSTSS GDSPGAAMDH DAAAAGPGWS
101: PHTARARTRT TTTSSRPMSW NFSASAASSQ AAQLPADIDI SPRPAAAPRG HSTPAAGRRS VGSAQGTAGS SASPGPVQDH IIAERRRREK INQRFIELST
201: VIPNLKKMDK ATILGDAVKY VRELQDKVKT MEDDDSAAAT TTTTIRSAVL VSKKIKSDDD DEDEDAGESS HSGLPEIEVR VSGEKTVLVR IHCKNARGLL
301: VRVLAEVEEL RLAITHTSVM PFPADTAIIT ITAKVEEGFN STVEEIVTRL NSSLRQHYAD NNSDDRNSAT KREC

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.