Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G029800.1 | Wheat | nucleus | 84.82 | 86.89 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 82.44 | 86.83 |
| HORVU3Hr1G002620.1 | Barley | plastid | 55.36 | 80.87 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 75.6 | 79.87 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 32.14 | 65.45 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 66.07 | 65.1 |
| Zm00001d038966_P001 | Maize | plastid | 30.95 | 50.98 |
| Zm00001d026009_P001 | Maize | plastid | 30.65 | 50.49 |
| EES10849 | Sorghum | nucleus | 48.81 | 47.54 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 50.89 | 47.37 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 49.4 | 46.11 |
| Zm00001d003604_P001 | Maize | nucleus | 45.24 | 45.24 |
| Zm00001d025462_P001 | Maize | nucleus | 43.45 | 44.24 |
| KXG37866 | Sorghum | nucleus | 48.51 | 43.94 |
| Zm00001d033413_P001 | Maize | nucleus | 40.18 | 42.45 |
| TraesCS5D01G517900.1 | Wheat | nucleus | 40.77 | 42.28 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 44.35 | 41.16 |
| Zm00001d033412_P001 | Maize | nucleus | 44.35 | 40.38 |
| EER93685 | Sorghum | mitochondrion | 44.35 | 40.05 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 42.86 | 39.56 |
| Zm00001d024781_P001 | Maize | nucleus | 37.8 | 35.98 |
| TraesCS5D01G020600.1 | Wheat | nucleus | 38.99 | 35.03 |
| OQU77369 | Sorghum | nucleus | 41.67 | 33.33 |
| OQU75589 | Sorghum | nucleus | 37.8 | 32.99 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 32.74 | 29.33 |
| TraesCS4D01G330500.1 | Wheat | nucleus | 24.4 | 25.95 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 24.4 | 25.47 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 13.39 | 17.58 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 12.8 | 15.75 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 12.2 | 15.47 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 12.8 | 15.41 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 12.8 | 15.41 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 12.5 | 15.27 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 14.29 | 10.32 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 19.35 | 9.35 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 16.37 | 9.2 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 16.96 | 9.12 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 13.69 | 8.11 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 13.39 | 7.64 |
| TraesCS2D01G406800.1 | Wheat | plastid | 10.42 | 7.53 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 13.99 | 7.45 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 12.2 | 7.36 |
| TraesCS1D01G094000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 2.98 | 5.0 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G014900.1 | EnsemblPlantsGene:TraesCS3D01G014900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:5174134..5176386
Molecular Weight (calculated)
36553.3 Da
IEP (calculated)
7.293
GRAVY (calculated)
-0.395
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLDDSLLF MQWALSTLQN EEDQGGAVEN RAGFPCLQAL HDSPELAEAH NRLSSGTDSR PDGGIISPSP DAAVQQVSNS TFTSLPASGS MSSTGATNTH
101: SMSWNFNAAH PSSVGGGTQA ARAPLRSGVS QPTRRAAARK VGACAQDHIM AERKRREKTN QRFIELSAVI PGLKKMDKGT ILSNATSYVK QLQEKVKSLE
201: AAGGSHRRVE TLVLVREPSR HAVPNSDEGS SLFSSAARMP ARSQRLPEIE AKLSENKVML RIHCEINGKG VVARVLAELE EFHLCIVHNN VMPFTESTVI
301: ITTMAKVEEG FTVNAEEIVR RLNYVMYQDS CNKSCY
101: SMSWNFNAAH PSSVGGGTQA ARAPLRSGVS QPTRRAAARK VGACAQDHIM AERKRREKTN QRFIELSAVI PGLKKMDKGT ILSNATSYVK QLQEKVKSLE
201: AAGGSHRRVE TLVLVREPSR HAVPNSDEGS SLFSSAARMP ARSQRLPEIE AKLSENKVML RIHCEINGKG VVARVLAELE EFHLCIVHNN VMPFTESTVI
301: ITTMAKVEEG FTVNAEEIVR RLNYVMYQDS CNKSCY
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.