Factsheet for TraesCS1D01G196900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G208000.1	Wheat	nucleus	99.28	99.57
HORVU1Hr1G050560.1	Barley	nucleus	96.55	98.1
TraesCS1A01G193200.1	Wheat	nucleus	93.96	94.23
Os10t0575000-01	Rice	nucleus	82.73	82.26
KXG39194	Sorghum	nucleus	82.59	81.19
Zm00001d030028_P001	Maize	nucleus	82.01	80.85
Zm00001d047017_P001	Maize	nucleus	79.42	78.52
Bra017527.1-P	Field mustard	nucleus	18.99	58.41
GSMUA_Achr7P04720_001	Banana	nucleus	39.28	58.21
GSMUA_Achr3P00370_001	Banana	plastid	35.83	56.59
VIT_02s0012g01320.t01	Wine grape	nucleus	52.95	55.51
Bra013263.1-P	Field mustard	nucleus	21.15	54.24
Solyc08g005050.2.1	Tomato	nucleus	35.4	53.02
PGSC0003DMT400002963	Potato	nucleus	45.04	52.34
KRH75613	Soybean	nucleus	47.63	51.96
Bra010178.1-P	Field mustard	nucleus	44.75	51.83
AT1G32640.1	Thale cress	nucleus	45.61	50.88
Solyc08g076930.1.1	Tomato	nucleus	50.36	50.8
PGSC0003DMT400045204	Potato	nucleus	50.5	50.58
KRH74418	Soybean	nucleus	46.62	50.47
AT4G17880.1	Thale cress	nucleus	42.59	50.25
KRH45440	Soybean	nucleus	47.19	50.15
Bra024998.1-P	Field mustard	nucleus	39.86	47.76
KRH39540	Soybean	nucleus	49.21	46.79
Bra013264.1-P	Field mustard	nucleus	19.86	46.46
AT5G46760.1	Thale cress	nucleus	39.42	46.28
GSMUA_AchrUn_...	Banana	cytosol	33.09	44.49
Bra017523.1-P	Field mustard	nucleus	31.8	43.59
Bra017520.1-P	Field mustard	nucleus	30.94	43.17
AT5G46830.1	Thale cress	nucleus	30.79	41.88
Bra024993.1-P	Field mustard	nucleus	22.16	40.85
Bra024992.1-P	Field mustard	nucleus	15.83	40.59
VIT_02s0025g02610.t01	Wine grape	nucleus	20.72	39.89
PGSC0003DMT400014097	Potato	nucleus	25.18	38.29
Solyc10g009290.1.1	Tomato	nucleus	24.32	37.47
PGSC0003DMT400014089	Potato	nucleus	20.58	37.24
VIT_15s0048g02820.t01	Wine grape	nucleus	26.62	37.22
PGSC0003DMT400047220	Potato	nucleus	24.03	36.95
Solyc10g009270.2.1	Tomato	nucleus	20.72	36.64
Solyc01g096370.2.1	Tomato	nucleus	23.6	36.44
PGSC0003DMT400028057	Potato	nucleus	20.29	36.25
TraesCS5D01G313600.1	Wheat	nucleus	14.39	35.84
TraesCS5D01G313400.1	Wheat	nucleus	13.96	35.53
PGSC0003DMT400031899	Potato	plastid	22.01	35.5
TraesCS5D01G313500.1	Wheat	nucleus	14.24	35.48
Solyc08g083170.1.1	Tomato	extracellular	19.71	35.4
TraesCS1D01G374800.1	Wheat	nucleus	13.38	35.09
KRH47834	Soybean	nucleus	23.17	34.7
KRH06400	Soybean	nucleus	23.17	34.55
Solyc08g008600.2.1	Tomato	nucleus	22.3	34.29
PGSC0003DMT400015017	Potato	nucleus	22.45	34.21
TraesCS3D01G253700.1	Wheat	nucleus	22.88	34.19
TraesCS5D01G313700.1	Wheat	nucleus	13.53	34.18
TraesCS7D01G102200.1	Wheat	nucleus	12.23	33.2
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	9.5	33.0
AT4G00870.1	Thale cress	nucleus, plastid	19.86	32.62
TraesCS3D01G166300.2	Wheat	nucleus	25.47	28.32
TraesCS4D01G275500.1	Wheat	nucleus	23.74	27.59
TraesCS4D01G235900.1	Wheat	nucleus	9.78	21.12
TraesCS2D01G406900.1	Wheat	nucleus	17.12	20.99
TraesCS4D01G330500.1	Wheat	nucleus	9.5	20.89
TraesCS2D01G575600.3	Wheat	nucleus, plastid	17.7	20.88
TraesCS4D01G306400.1	Wheat	nucleus	4.89	20.61
TraesCS4D01G224600.1	Wheat	nucleus	16.4	20.47
TraesCS2D01G406800.1	Wheat	plastid	13.53	20.22
TraesCS5D01G517900.1	Wheat	nucleus	9.35	20.06
TraesCS3D01G014900.1	Wheat	nucleus	9.35	19.35
TraesCS4D01G019200.1	Wheat	nucleus	9.78	18.89
TraesCS4D01G018700.1	Wheat	nucleus	9.78	18.84
TraesCS4D01G018800.2	Wheat	nucleus	9.64	18.51
TraesCS4D01G306300.1	Wheat	nucleus	8.92	18.18
TraesCS4D01G019100.1	Wheat	nucleus	9.35	17.86
TraesCS5D01G020600.1	Wheat	nucleus	9.21	17.11
TraesCS4D01G056900.2	Wheat	nucleus	9.21	17.07
TraesCS1D01G094200.1	Wheat	nucleus	13.38	14.74

Protein Annotations

EnsemblPlants:TraesCS1D01G196900.1	EnsemblPlantsGene:TraesCS1D01G196900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:

Description

No Description!

Coordinates

chr1D:+:277092891..277094978

Molecular Weight (calculated)

75351.3 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.578

Length

695 amino acids

Sequence
(BLAST)

001: MNLWTDDNAS MMEAFMASAD MPAFPWGAAA TPPPPAAVPQ QPAFNQDTLQ QRLQAIIEGS RETWTYAIFW QSSTDAGASL LGWGDGYYKG CDDADKRRQQ
101: PTPASAAEQE HRKRVLRELN SLIAGGGAAA PDEAVEEEVT DTEWFFLVSM TQSFPNGMGL PGQALFAGQA TWIATGLASA PCERARQAYT FGLRTMVCIP
201: LGTGVLELGA TEVIFQTNDS LGRIRSLFNL NGGGGGSGSW PPIAPPPQEA ETDPSVLWLA DAPAGDMKES PPSVEISVSK PPPPQPPQIH HFENGSTSTL
301: TENPSLSVHA QQPPPQQAAA AAQRQNQHQQ QLQHQHQLQL QHQHNQGPFR RELNFSDFAS NASVTVTPPF FKPESGEILN FGADSTSRRN PSPAPPAATA
401: SLTTAPGSLF SQHTATVTAP SNDAKNNPKR SMEATSRASN TNHHQNATAN EGMLSFSSAP TTRPSTGTGA PAKSESDHSD LEASVREVES SRVVPPPEEK
501: RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNVSKMDKA SLLGDAISYI NELRGKMTAL ESDKETLHSQ IEALKKERDA RPAAPSSGMH
601: DNGARCHAVE IEAKILGLEA MIRVQCHKRN HPAAKLMTAL RELDLDVYHA SVSVVKDIMI QQVAVKMATR VYSQDQLNAA LYGRLAEPGT AMQIR

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.