Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G506500.1 | Wheat | cytosol | 79.71 | 82.09 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 71.01 | 78.19 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 74.88 | 77.89 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 48.79 | 58.38 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 38.65 | 53.33 |
| OQU82468 | Sorghum | nucleus | 51.21 | 48.4 |
| Zm00001d002029_P003 | Maize | nucleus | 49.28 | 47.22 |
| Os04t0653000-01 | Rice | cytosol, nucleus, plastid | 48.79 | 46.76 |
| Zm00001d026477_P002 | Maize | nucleus | 44.93 | 40.43 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 35.27 | 32.02 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 32.37 | 30.59 |
| AT5G20900.1 | Thale cress | cytosol | 27.05 | 29.95 |
| Bra020135.1-P | Field mustard | cytosol | 30.92 | 28.96 |
| CDY16574 | Canola | cytoskeleton, cytosol, nucleus | 27.54 | 28.64 |
| CDX92427 | Canola | cytosol | 27.54 | 28.36 |
| CDY09086 | Canola | cytosol | 29.95 | 28.05 |
| KRH12644 | Soybean | nucleus | 27.05 | 27.86 |
| Bra002338.1-P | Field mustard | cytosol | 27.05 | 27.86 |
| KRH37606 | Soybean | cytosol, nucleus, plastid | 27.54 | 27.67 |
| KRH19420 | Soybean | nucleus | 22.22 | 22.22 |
| TraesCS2D01G176800.1 | Wheat | plastid | 24.15 | 21.64 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 23.19 | 20.87 |
| AT3G43440.1 | Thale cress | cytosol | 23.67 | 20.59 |
| KRH02523 | Soybean | cytosol | 18.84 | 19.8 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G507200.1 | EnsemblPlantsGene:TraesCS2D01G507200 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | ncoils:Coil |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF5 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| SMART:SM00979 | MapMan:15.5.45 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:600975902..600980997
Molecular Weight (calculated)
21854.0 Da
IEP (calculated)
9.535
GRAVY (calculated)
-0.532
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLERSAAT IKAEQGEAQR KEAERKEQEQ EQEHKEQETQ QPGLTGRPPL ANGRSGMLRM SSPPANPGQL TIFYGGSVCV YDSVPPEKAQ AIMLIAAAAA
101: AASKSNGTTA VKPPAMSATN AIQAMLTRSL SLQSTSVANG QPQAVADPGS ICKLQADLPI ARRHSLQRFL EKRRDRVVSK APYGAGKPSE GMGASSGMEV
201: VAEGKAQ
101: AASKSNGTTA VKPPAMSATN AIQAMLTRSL SLQSTSVANG QPQAVADPGS ICKLQADLPI ARRHSLQRFL EKRRDRVVSK APYGAGKPSE GMGASSGMEV
201: VAEGKAQ
001: MTKVKDEPRA SVEGGCGVAD GDGGAAEIGG TGSVEKSINE VRSTEIQTAE PTVPPNQLTI FFGGSVTVFD GLPSEKVQEI LRIAAKAMET KNSTSISPVS
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
101: SPALNRAPSF SSTSNVASPA AQPFPIQPIS FCRSTADLPI ARRHSLQRFL EKRRDRLVNK NPYPTSDFKK TDVPTGNVSI KEEFPTA
Arabidopsis Description
TIFY3BProtein TIFY 3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C5K8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.