Factsheet for TraesCS1A01G369200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G448500.1	Wheat	nucleus	72.73	56.25
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	45.96	55.49
TraesCS5A01G306400.1	Wheat	nucleus	55.56	49.33
TraesCS5A01G306500.1	Wheat	nucleus	60.61	42.7
TraesCS5A01G306200.1	Wheat	nucleus	60.1	42.65
TraesCS5A01G306700.1	Wheat	peroxisome	54.55	39.42
EER99201	Sorghum	nucleus	57.07	38.18
TraesCS5A01G306600.1	Wheat	nucleus	52.53	37.82
Zm00001d021164_P001	Maize	nucleus	55.05	37.59
Zm00001d006150_P001	Maize	nucleus	54.04	36.77
Bra017527.1-P	Field mustard	nucleus	25.25	22.12
Bra013263.1-P	Field mustard	nucleus	25.25	18.45
CDY70013	Canola	nucleus	22.73	17.86
Bra024992.1-P	Field mustard	nucleus	23.74	17.34
Solyc10g009290.1.1	Tomato	nucleus	37.37	16.41
KRH47834	Soybean	nucleus	37.37	15.95
Solyc08g083170.1.1	Tomato	extracellular	30.81	15.76
PGSC0003DMT400047220	Potato	nucleus	35.86	15.71
PGSC0003DMT400014089	Potato	nucleus	30.3	15.62
Solyc01g096370.2.1	Tomato	nucleus	35.35	15.56
PGSC0003DMT400014097	Potato	nucleus	35.86	15.54
VIT_02s0025g02610.t01	Wine grape	nucleus	28.28	15.51
KRH06400	Soybean	nucleus	36.36	15.45
PGSC0003DMT400028057	Potato	nucleus	30.3	15.42
TraesCS5A01G555300.1	Wheat	nucleus	18.69	15.1
PGSC0003DMT400031899	Potato	plastid	32.32	14.85
Solyc10g009270.2.1	Tomato	nucleus	29.29	14.76
AT4G00870.1	Thale cress	nucleus, plastid	30.3	14.18
VIT_15s0048g02820.t01	Wine grape	nucleus	35.35	14.08
Bra017520.1-P	Field mustard	nucleus	34.34	13.65
Bra017523.1-P	Field mustard	nucleus	34.34	13.41
Bra024993.1-P	Field mustard	nucleus	25.25	13.26
AT5G46830.1	Thale cress	nucleus	33.33	12.92
TraesCS5A01G505100.1	Wheat	nucleus	18.69	12.37
TraesCS3A01G252900.1	Wheat	nucleus	27.27	11.76
Solyc08g008600.2.1	Tomato	nucleus	26.26	11.5
TraesCS4A01G408700.1	Wheat	nucleus	15.66	11.48
TraesCS5A01G555200.1	Wheat	nucleus	17.68	11.25
Bra024998.1-P	Field mustard	nucleus	32.83	11.21
AT4G17880.1	Thale cress	nucleus	33.33	11.21
PGSC0003DMT400015017	Potato	nucleus	25.76	11.18
AT5G46760.1	Thale cress	nucleus	33.33	11.15
Bra010178.1-P	Field mustard	nucleus	33.33	11.0
AT1G32640.1	Thale cress	nucleus	33.84	10.75
VIT_02s0012g01320.t01	Wine grape	nucleus	35.86	10.71
KRH75613	Soybean	nucleus	34.34	10.68
TraesCS4A01G257900.2	Wheat	nucleus	20.2	10.61
TraesCS4A01G292800.1	Wheat	nucleus	19.7	10.6
KRH45440	Soybean	nucleus	34.85	10.55
TraesCS4A01G059100.1	Wheat	nucleus	17.68	10.54
TraesCS4A01G408800.1	Wheat	nucleus	20.2	10.42
TraesCS3A01G019100.1	Wheat	nucleus	16.67	10.38
PGSC0003DMT400002963	Potato	nucleus	31.31	10.37
TraesCS3A01G019000.1	Wheat	nucleus	16.67	10.34
TraesCS4A01G292700.1	Wheat	nucleus	18.69	10.31
KRH74418	Soybean	nucleus	33.33	10.28
TraesCS4A01G354100.1	Wheat	nucleus	16.67	10.15
TraesCS7A01G558700.1	Wheat	nucleus	15.66	9.66
Solyc08g076930.1.1	Tomato	nucleus	32.83	9.43
TraesCS5A01G014800.1	Wheat	nucleus	18.69	9.41
PGSC0003DMT400045204	Potato	nucleus	32.83	9.37
KRH39540	Soybean	nucleus	33.84	9.17
TraesCS3A01G158600.1	Wheat	nucleus	28.28	9.09
TraesCS4A01G028900.1	Wheat	nucleus	26.77	8.88
TraesCS1A01G193200.1	Wheat	nucleus	30.81	8.8
Solyc08g005050.2.1	Tomato	nucleus	20.2	8.62
TraesCS5A01G489500.1	Wheat	nucleus	22.73	7.89
TraesCS5A01G558500.1	Wheat	nucleus	22.73	7.69
TraesCS2A01G409600.2	Wheat	nucleus, plastid	21.21	7.53
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	22.73	7.19
TraesCS2A01G409400.1	Wheat	nucleus	20.2	7.04
Bra013264.1-P	Field mustard	nucleus	9.6	6.4
CDY70012	Canola	nucleus	5.05	3.75

Protein Annotations

EnsemblPlants:TraesCS1A01G369200.1	EnsemblPlantsGene:TraesCS1A01G369200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr1A:+:547004383..547004979

Molecular Weight (calculated)

21859.1 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.497

Length

198 amino acids

Sequence
(BLAST)

001: MDDLLCPPSS FLPPTSSSQF CTVGHQVLEF VSQDLPEQWL FHDGMMSKNV DGELWPMGST LPRSPQLSEL PPPSLLLANP QCHAKRRGRK PGPRSDGRHS
101: VGHVQAERQR RDKLNRRFCD LRAVVPNVSR MDKASLLADA ATYIAELRSR VASLEEETNK ALEESPTAAS RGGPASKFLQ VDETVEVRMM GRDAAAVV

Best Arabidopsis Sequence Match ( AT2G46510.1 )
(BLAST)

001: MNMSDLGWDD EDKSVVSAVL GHLASDFLRA NSNSNQNLFL VMGTDDTLNK KLSSLVDWPN SENFSWNYAI FWQQTMSRSG QQVLGWGDGC CREPNEEEES
101: KVVRSYNFNN MGAEEETWQD MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYSSGKHV WLSDAVNSES DYCFRSFMAK
201: SAGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM RRVTQPVMVT SNTNMTGGIH KLFGQDLSGA HAYPKKLEVR RNLDERFTPQ SWEGYNNNKG
301: PTFGYTPQRD DVKVLENVNM VVDNNNYKTQ IEFAGSSVAA SSNPSTNTQQ EKSESCTEKR PVSLLAGAGI VSVVDEKRPR KRGRKPANGR EEPLNHVEAE
401: RQRREKLNQR FYALRSVVPN ISKMDKASLL GDAISYIKEL QEKVKIMEDE RVGTDKSLSE SNTITVEESP EVDIQAMNEE VVVRVISPLD SHPASRIIQA
501: MRNSNVSLME AKLSLAEDTM FHTFVIKSNN GSDPLTKEKL IAAFYPETSS TQPPLPSSSS QVSGDI

Arabidopsis Description

AIBTranscription factor ABA-INDUCIBLE bHLH-TYPE [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.